PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005709.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 349aa MW: 38973.9 Da PI: 8.2978

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005709.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.2	7.6e-41	190	267	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ k+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+ PCP005709.1 190 RCQAEGCAADLSHSKHYHRRHKVCEFHSKASTVIANGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQ 267 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MLDYEWGNPN NVVMLSPDTD SDSIHGSDPT RHHHQHNHAS TFLDHYASSQ ASAFNNLVPA 60 PPPPPPQPHH QASTFADHFN PTHHQAQQLH SIYDPHAYAS ASTYAPPHHH LHHHHHHHSM 120 LGLDPVHGGA ANGLMLIPKT EDMCPPVDFA SRIGLNLGGR TYFASEDDFM NRLYRRSRPG 180 SEITSTHSPR CQAEGCAADL SHSKHYHRRH KVCEFHSKAS TVIANGLTQR FCQQCSRFHL 240 LSEFDNGKRS CRKRLADHNR RRRKTQQTIQ EHHNSQHQQQ PPLERARNSS SDNVASSPPE 300 SAALSVSSVT VAVSPPRMTL DCFRQRAPYQ NAAATTSSGS SAHFFSQVG

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MLDYEWGNPN NVVMLSPDTD SDSIHGSDPT RHHHQHNHAS TFLDHYASSQ ASAFNNLVPA  60
PPPPPPQPHH QASTFADHFN PTHHQAQQLH SIYDPHAYAS ASTYAPPHHH LHHHHHHHSM  120
LGLDPVHGGA ANGLMLIPKT EDMCPPVDFA SRIGLNLGGR TYFASEDDFM NRLYRRSRPG  180
SEITSTHSPR CQAEGCAADL SHSKHYHRRH KVCEFHSKAS TVIANGLTQR FCQQCSRFHL  240
LSEFDNGKRS CRKRLADHNR RRRKTQQTIQ EHHNSQHQQQ PPLERARNSS SDNVASSPPE  300
SAALSVSSVT VAVSPPRMTL DCFRQRAPYQ NAAATTSSGS SAHFFSQVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	2e-70	SBP family protein