PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP005825.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 25787.8 Da    PI: 8.6121
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP005825.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.35.5e-251962851
                 HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  rqvtfskRr gi+KKAeELS+LC+ evaviifs+tgkl++yss
  PCP005825.1 19 ARQVTFSKRRRGIFKKAEELSILCESEVAVIIFSQTGKLFDYSS 62
                 79****************************************96 PP
2K-box46.51.6e-16861721298
        K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  ++ +s +++  +L ke+e   r++R+++GedL++L+l +L++Le+ +e s+ ++ ++K++ ++++i  l +k  el e+n++L+++l
  PCP005825.1  86 SHPQSEKENTIRLSKELEDKTRKLRQMKGEDLQDLDLDQLNKLEKMVEASVGRVIKTKEKKIMSEIMALTNKGAELIEANNQLKQRL 172
                  56789999999*************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MVKRMNEKIK IRRIDYLPAR QVTFSKRRRG IFKKAEELSI LCESEVAVII FSQTGKLFDY  60
SSSRYGGLPS PSCKKSVLAA ASFPISHPQS EKENTIRLSK ELEDKTRKLR QMKGEDLQDL  120
DLDQLNKLEK MVEASVGRVI KTKEKKIMSE IMALTNKGAE LIEANNQLKQ RLVMLSARGD  180
IEPAAIMELE NLNNVGEEGM TSESATNVTA CSSSALSLED DCSDILSLKL G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-47MIKC_MADS family protein