PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005881.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 425aa MW: 48464.5 Da PI: 4.3608

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005881.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	47.3	6.7e-15	10	140	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykv..ePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 p GfrF+P d+e+ L+k v +k+ ++ i+++ ++ + eP+++ +++ + + ++++fFs+ +++ ++ +r ++ ++g+W+++g+++ PCP005881.1 10 PLGFRFDPADQEIF-ILLNKIVVDKDplmAGYDSLIHKCSLFGHnsEPSEIWERYGGdqvHGQQLFFFSELKRSRKNISR--KMGHAGTWSESGSKEI 104 78********99.7788887777767433344698754339753333222556889999998766444..45679*****9665 PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ + +g k+ + f + + ++ + +W+++ey+l PCP005881.1 105 EGHRNPNPIGKKRKFRFEN-KCKSEDHGRWLLEEYSL 140 56668899*****85.5555589******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MSAMAKFRPP LGFRFDPADQ EIFILLNKIV VDKDPLMAGY DSLIHKCSLF GHNSEPSEIW 60 ERYGGDQVHG QQLFFFSELK RSRKNISRKM GHAGTWSESG SKEIEGHRNP NPIGKKRKFR 120 FENKCKSEDH GRWLLEEYSL YDAAAHDCSD TKASKNRYDF DFVICKMRRK SGENKRKSSD 180 DQNTNNVEEP QESCSTLITN TDHLVLPLPD ESNKRKRMTD VAYDDDPALF FNEDMLITSP 240 TDSISIEELL APLDSESAIA SSENLSPDQM AETQEDVPLP TVGYTWPGAD DGEPLETYYI 300 PSNYYPWEDH QPKDQNVNVI NTVGESNDIL FLDDNMLRSS HIPTFDAEDI FATLDFDHDQ 360 KDGNQEEQLP LPTAGSAHLA VEDGGPIEAN YQILSNYFQN LLNQPFEDST YNYCSDRFIN 420 ELMGF

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MSAMAKFRPP LGFRFDPADQ EIFILLNKIV VDKDPLMAGY DSLIHKCSLF GHNSEPSEIW  60
ERYGGDQVHG QQLFFFSELK RSRKNISRKM GHAGTWSESG SKEIEGHRNP NPIGKKRKFR  120
FENKCKSEDH GRWLLEEYSL YDAAAHDCSD TKASKNRYDF DFVICKMRRK SGENKRKSSD  180
DQNTNNVEEP QESCSTLITN TDHLVLPLPD ESNKRKRMTD VAYDDDPALF FNEDMLITSP  240
TDSISIEELL APLDSESAIA SSENLSPDQM AETQEDVPLP TVGYTWPGAD DGEPLETYYI  300
PSNYYPWEDH QPKDQNVNVI NTVGESNDIL FLDDNMLRSS HIPTFDAEDI FATLDFDHDQ  360
KDGNQEEQLP LPTAGSAHLA VEDGGPIEAN YQILSNYFQN LLNQPFEDST YNYCSDRFIN  420
ELMGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	118	KRSRKNISRKMGHAGTWSESGSKEIEGHRNPNPIGKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	7e-13	NAC family protein