PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP006020.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 224aa    MW: 24664.9 Da    PI: 8.7083
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP006020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.42.1e-42441431100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael++++
  PCP006020.1  44 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPETQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVR 141
                  7**********************************************************************************************999 PP

       DUF260  99 ee 100
                  +e
  PCP006020.1 142 DE 143
                  87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MSRERERVDE IGKKFKRETD ASSHYQMGRR HMLGPPGTLN TITPCAACKL LRRRCAQECP  60
FSPYFSPHEP QKFASVHKVF GASNVSKMLM EVPETQRADA ANSLVYEANV RLRDPVYGCM  120
GAISALQQQV QSLQAELNAV RDEILKYKYR EANLLPSNSH HMALFSTSGA VSAASLPQTP  180
QPTPPPPPPP PMPPTSSSSS MYTNQQTSAA DYSSLSSENV SFFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.18e-90LBD family protein