PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP006028.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 248aa MW: 27286.5 Da PI: 7.9729

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP006028.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.5	1.5e-45	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l +k PCP006028.1 9 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLTCAK 106 7*********************************************************************************************9998 PP DUF260 99 ee 100 +e PCP006028.1 107 SE 108 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MASSSTNSPC AACKFLRRKC QPECVFAPYF PPDQPQKFAN VHKVFGASNV TKLLNELHPH 60 QREDAVNSLA YEADMRLRDP VYGCVGVISL LQHQLRQLQM DLTCAKSELS KYQNLQGLTA 120 SHGLIAAAAA AAATATAATH THNNNHHHPL HLQSSSLNNL GMEINLISGG GGGREHYPHQ 180 FFPRDRERDH HSHHQQQMMI RNFDAGNNYD ASLLSMNAAA GGIHGQLSHQ FQQTRAAAGD 240 DRRTIDPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	4e-84	LBD family protein