PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP006074.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 341aa MW: 38051.7 Da PI: 6.2311

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP006074.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	6.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l +++++ G g+W++ ++ g++R++k+c++rw +yl PCP006074.1 14 KGPWTPEEDQKLMKYIQKNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.8	2.1e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l PCP006074.1 67 RGKFSQEEEQTILNLHSILGNK-WSAIAGHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MGRSPCCDES GLKKGPWTPE EDQKLMKYIQ KNGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SQEEEQTILN LHSILGNKWS AIAGHLPGRT DNEIKNFWNT HLKKKLIQMG 120 FDPMTHRPRS DIFSSLPHLL ALVNLKELLD HGSNHQSCWD EQALRLQAEA SQMARLQYLQ 180 CLLQPNNNSF GAATANNLND FTDMETINLL NSLCSSQLDI QDPTAQYPVG NFQPVVQDNS 240 VPFSHLPDLQ TYPTPPNKDM VNDQAPDPFT ALSQVENSPN NPWNIPSSSN TTLSPTSVTP 300 PVTVTEISVS NNLGDACSTS SYAGVATSAW SDLLFEDPFF Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-104	MYB family protein