PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP006306.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 421aa    MW: 46468 Da    PI: 8.9416
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP006306.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.66.4e-1371127155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  ++n  ++k+   g ++ +e Aa+a++ a++k++g
  PCP006306.1  71 SIYRGVTRHRWTGRYEAHLWDkSTWNHnQNKKGKQGAYDDEEAAARAYDLAALKYWG 127
                  57*******************6666555664444499******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    
MASSSSDPGP KTESGSGGGS GGGGAEASEA VIASDQLMVY RGVKKSKKER GCTAKERISK  60
MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNHNQN KKGKQGAYDD EEAAARAYDL  120
AALKYWGPGT LINFPVTDYT RDLEEMQNVS REEYLASLRR KSSGFSRGIS KFRGLSSRWE  180
PSLGRMGGSE YFNSTHYGVD PATESDILGA LCIERKIDLT SYIKWWGSNR SRQAETSMKF  240
SEETKHGCVG DIGVELKTLE WGIQPTEPYQ MPRLGISRVS KKHKGTRVSA MSILSRSAAY  300
KNLQEKASQK EENNADNDEN ENKNIIHKMD YGKAIEKSTS HDERLSSVLG MSGGMSLQSD  360
VFPLAPFLSA PLLTNYNAVD PLVDPILWTS LAPVLPSGIS RTTEITKTET SSTFTLFQPD  420
E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-132AP2 family protein