PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP006547.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 722aa MW: 77530.2 Da PI: 6.4666

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP006547.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.2	8.1e-15	459	514	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC.......TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas....kapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq PCP006547.1 459 VHNLSERRRRDRINEKMRALQELIPNCNkteiFIMTYKVDKASMLDEAIEYLKTLQ 514 6***********************87677755567****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MPLSELYRIA GRVDSSQDLE NDFLELVWEN GQVVMQGQSS RTRKNPSCNS LPSSNTPKNR 60 DRDVGNSNVG KTGKFGSVVD SGLDEIPLSV PSSEMGLSED DDMLPWLNYS IDEPLHHEYC 120 HDFLPEFSSA TANEASSNHN LASIDKRSSS SQVLRDSNPN SAHEDASLQQ RNVGKVALIG 180 RADVSRPRTG TSQLYSLSSQ QSQASYPSSR SRVSDTAGDN TSATHRGVGK NSNQISSTGG 240 FPGMKMQRQD PVMPRNTNPS IMNFTHFSRP AALAKANVQN NGAMAGLGSS SMERIGDKDK 300 FSAATRNNLP ESMLIDSSSG APKESNSQCQ PILVRSSDEL KPTETKTLEE PCTAKRSEGA 360 CQEETSKNDI NANDKPCESA SRVSPGGEKT LEPVVASSVC SGNSVERGSD DPPHALKRKC 420 RETDESECHS DDVEDESVGV KKGVHARGTG SKRSRAAEVH NLSERRRRDR INEKMRALQE 480 LIPNCNKTEI FIMTYKVDKA SMLDEAIEYL KTLQLQVQIM SMGAGMYMPP MMLPPGMQHM 540 HGPRVAHFSP MGVGMGMGMR LGMGFGMGMP DMNGASSSYP MLQVPPMQGT HFPGSHMAGH 600 NAFNGMMGSN LQMFGLPSQG VPMQMQYAPL APSSGGPLVK SSAGLNAGSS GGPVENVESA 660 PVSGSKDLVQ NMNSQVMQNN NANSSMNPTS SQGQAINEGF GQTALVGNNV QAADANNNRA 720 NR

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MPLSELYRIA GRVDSSQDLE NDFLELVWEN GQVVMQGQSS RTRKNPSCNS LPSSNTPKNR  60
DRDVGNSNVG KTGKFGSVVD SGLDEIPLSV PSSEMGLSED DDMLPWLNYS IDEPLHHEYC  120
HDFLPEFSSA TANEASSNHN LASIDKRSSS SQVLRDSNPN SAHEDASLQQ RNVGKVALIG  180
RADVSRPRTG TSQLYSLSSQ QSQASYPSSR SRVSDTAGDN TSATHRGVGK NSNQISSTGG  240
FPGMKMQRQD PVMPRNTNPS IMNFTHFSRP AALAKANVQN NGAMAGLGSS SMERIGDKDK  300
FSAATRNNLP ESMLIDSSSG APKESNSQCQ PILVRSSDEL KPTETKTLEE PCTAKRSEGA  360
CQEETSKNDI NANDKPCESA SRVSPGGEKT LEPVVASSVC SGNSVERGSD DPPHALKRKC  420
RETDESECHS DDVEDESVGV KKGVHARGTG SKRSRAAEVH NLSERRRRDR INEKMRALQE  480
LIPNCNKTEI FIMTYKVDKA SMLDEAIEYL KTLQLQVQIM SMGAGMYMPP MMLPPGMQHM  540
HGPRVAHFSP MGVGMGMGMR LGMGFGMGMP DMNGASSSYP MLQVPPMQGT HFPGSHMAGH  600
NAFNGMMGSN LQMFGLPSQG VPMQMQYAPL APSSGGPLVK SSAGLNAGSS GGPVENVESA  660
PVSGSKDLVQ NMNSQVMQNN NANSSMNPTS SQGQAINEGF GQTALVGNNV QAADANNNRA  720
NR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	464	469	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-52	bHLH family protein