PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP006549.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 420aa MW: 46833.7 Da PI: 8.0642

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP006549.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.2	1.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl PCP006549.1 14 KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	45.1	2.3e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ PCP006549.1 67 RGPFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89******************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGPF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG 120 IDPNTHKPLS EVLDQNIGKE INNNNNITLS PTYKSNEKAS VGSNELSLVE AVSSKHPTSA 180 SENRFNPVEV SSTSKLISSN GGSSKSLTHE GSPSSCGPCD FVGYFSFPHH NNQNNYGSSS 240 DMGLQAVNQN TTFSFLNQNP EFLQPSMSSS SAIFTAPPPP PTRVKPSISL PSDNSSTWDS 300 NANNSNSSGG GYFDSSATFS WWPPEAVKSD DPEEIKWSEY LHNTSFQMGT HQASQPATYS 360 EIKPESQSHI LSNSLSATSW HHQNQQHQHQ HQHQHQQALQ ASEMYTKDLQ RLAVSFGQTL

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGPF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPNTHKPLS EVLDQNIGKE INNNNNITLS PTYKSNEKAS VGSNELSLVE AVSSKHPTSA  180
SENRFNPVEV SSTSKLISSN GGSSKSLTHE GSPSSCGPCD FVGYFSFPHH NNQNNYGSSS  240
DMGLQAVNQN TTFSFLNQNP EFLQPSMSSS SAIFTAPPPP PTRVKPSISL PSDNSSTWDS  300
NANNSNSSGG GYFDSSATFS WWPPEAVKSD DPEEIKWSEY LHNTSFQMGT HQASQPATYS  360
EIKPESQSHI LSNSLSATSW HHQNQQHQHQ HQHQHQQALQ ASEMYTKDLQ RLAVSFGQTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G57560.1	8e-89	MYB family protein