PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP006651.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 483aa MW: 55110.9 Da PI: 6.4272

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP006651.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.3	2.1e-19	215	261	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WTteEd ll+++v+q+G + W+ Ia++++ gR +kqc++rw+++l PCP006651.1 215 KGQWTTEEDRLLIQLVEQFGVRKWSHIAQMLP-GRIGKQCRERWHNHL 261 799***************************.***********97 PP
2	Myb_DNA-binding	55.2	1.6e-17	267	309	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd+ l++a++ G++ W+ Ia++++ gRt++++k++w+ PCP006651.1 267 KDTWSEEEDKTLIQAHADIGNK-WAEIAKRLP-GRTENSIKNHWN 309 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MELNKLRKKL VSQIHIPLLA PETYVKSYAM KDEFLFEASS SSKRSYNYLQ DFHHLDHQFH 60 VNVSSSNPMF GTHTPCFDPY SDTSYPYDQN SSHQDVNFYE CKPLNVAENN GGHGQVLDNF 120 QGGSYLNFPT HHRSSNPFDH VVGTSSHRRA TNFLPLDCTQ DIKPMNFSVP DEVSCINNAD 180 QTRYHRKFGM NGESEVTGVT RGSTVKGRKK SNVVKGQWTT EEDRLLIQLV EQFGVRKWSH 240 IAQMLPGRIG KQCRERWHNH LRPDIKKDTW SEEEDKTLIQ AHADIGNKWA EIAKRLPGRT 300 ENSIKNHWNA TKRRQYSKRK CRSKHPRGSI LQEYIKSLNL DSASNSTGRQ RKNSSASNNN 360 GGGTSTKAAA ATYQQPQTNV GLLCANDQLV PSYNYFNEDP DFCFDENIFE EGCGIDSLLD 420 DIPCAADVGE KNSNFDGKNE IDYDHVDEGN FDEKDFEMEM QVDLESNEVK KEMDLVEMIS 480 QVN

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MELNKLRKKL VSQIHIPLLA PETYVKSYAM KDEFLFEASS SSKRSYNYLQ DFHHLDHQFH  60
VNVSSSNPMF GTHTPCFDPY SDTSYPYDQN SSHQDVNFYE CKPLNVAENN GGHGQVLDNF  120
QGGSYLNFPT HHRSSNPFDH VVGTSSHRRA TNFLPLDCTQ DIKPMNFSVP DEVSCINNAD  180
QTRYHRKFGM NGESEVTGVT RGSTVKGRKK SNVVKGQWTT EEDRLLIQLV EQFGVRKWSH  240
IAQMLPGRIG KQCRERWHNH LRPDIKKDTW SEEEDKTLIQ AHADIGNKWA EIAKRLPGRT  300
ENSIKNHWNA TKRRQYSKRK CRSKHPRGSI LQEYIKSLNL DSASNSTGRQ RKNSSASNNN  360
GGGTSTKAAA ATYQQPQTNV GLLCANDQLV PSYNYFNEDP DFCFDENIFE EGCGIDSLLD  420
DIPCAADVGE KNSNFDGKNE IDYDHVDEGN FDEKDFEMEM QVDLESNEVK KEMDLVEMIS  480
QVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-96	MYB family protein