PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP006695.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Nin-like

Protein Properties

Length: 450aa MW: 51331.6 Da PI: 7.9456

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP006695.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.8	1.6e-26	169	219	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s +++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk++sl PCP006695.1 169 SKMLSRQTISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLTSL 219 578999******************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MGWLAKYDVV KDLGEDPFFF PHQPAFPSVH DFRGYACDWQ FDLPIVQDHR FPDPLPSLES 60 CVNIDPIYSS LDIPPIRTVL QDDEIFFGNG NALFGVNSND LCGGLTEINH NRHQQFQQQQ 120 QPPLLLTCKN DENGITDMND SLEERDKAIS ERPHSSKRHR SSSSSLSSSK MLSRQTISQY 180 FYMPITQAAK ELNVGLTLLK KRCRELGIRR WPHRKLTSLQ TLIRNIQELG KEGEEGEEKL 240 RNAIALLEME RKLLEEAPDM QLEDNTKRLR QACFKANYKK RKIMGTKAYG VFKGMRYKNV 300 VLWSVMISGL AVNGYGREAI EAFGEMQKMG VLPDDQTFTG LIFWVVLVEI NSQLKTAGYV 360 AHVTSELHNL GAEDKGLVPS YHSEKWAIAF GVLSTTPGTP IRVAKNLRIC VDCHNFAMAL 420 SGVYNREVII RDRARFHHFR EGRCSCNGYW

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MGWLAKYDVV KDLGEDPFFF PHQPAFPSVH DFRGYACDWQ FDLPIVQDHR FPDPLPSLES  60
CVNIDPIYSS LDIPPIRTVL QDDEIFFGNG NALFGVNSND LCGGLTEINH NRHQQFQQQQ  120
QPPLLLTCKN DENGITDMND SLEERDKAIS ERPHSSKRHR SSSSSLSSSK MLSRQTISQY  180
FYMPITQAAK ELNVGLTLLK KRCRELGIRR WPHRKLTSLQ TLIRNIQELG KEGEEGEEKL  240
RNAIALLEME RKLLEEAPDM QLEDNTKRLR QACFKANYKK RKIMGTKAYG VFKGMRYKNV  300
VLWSVMISGL AVNGYGREAI EAFGEMQKMG VLPDDQTFTG LIFWVVLVEI NSQLKTAGYV  360
AHVTSELHNL GAEDKGLVPS YHSEKWAIAF GVLSTTPGTP IRVAKNLRIC VDCHNFAMAL  420
SGVYNREVII RDRARFHHFR EGRCSCNGYW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	5e-42	Nin-like family protein