PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP006742.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 258aa    MW: 29497.6 Da    PI: 4.6682
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP006742.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-18552148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv +++q+G g+W++ ++  g+ R++k+c++rw +yl
      PCP006742.1  5 KGPWTAEEDQILVTYIQQHGHGNWRALPKLAGLLRCGKSCRLRWTNYL 52
                     79******************************99************97 PP
2Myb_DNA-binding49.78.8e-1658103148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++ +++++++lG++ W+ Ia++++ gRt++++k+ w+++l
      PCP006742.1  58 RGNFSREEEDAIINLHQMLGNR-WSQIAARLP-GRTDNEIKNVWHTHL 103
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MGLKKGPWTA EEDQILVTYI QQHGHGNWRA LPKLAGLLRC GKSCRLRWTN YLRPDIKRGN  60
FSREEEDAII NLHQMLGNRW SQIAARLPGR TDNEIKNVWH THLKKRLKSN QTESDSRAHF  120
YPRKTEQELE PIDDSSHCAK SDSLDCVPVS PARCTSSNTS FVTTNEDNNN NISNNVCVTF  180
DDYQANLPEP DDSFWSEVLP TEYYEETVNE FQAFGGDPQV NMGPTDGGFS LDMYNDNNMD  240
FWFNIFSGAE EIPELLGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103109LKKRLKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-70MYB family protein