PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP007521.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27402 Da    PI: 5.287
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP007521.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.2e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien   rqvtfskRr g+lKKA+EL +LCdaevaviifs+tgkl+e+ss
  PCP007521.1  9 KRIENANSRQVTFSKRRSGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59
                 79***********************************************96 PP
2K-box63.95.7e-22861611287
        K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                  + +++ ++el++Lk+e+ +Lq++q +llG++L++LslkeLqqLeqqL+++l +++++K++ll+eq+e+++ + +el
  PCP007521.1  86 EIQKQDCKELDNLKDEYAKLQKKQLRLLGKELTDLSLKELQQLEQQLNEGLLTVKERKEQLLTEQLEQSRIQVEEL 161
                  4467899**************************************************************9988887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGRGKIEIKR IENANSRQVT FSKRRSGLLK KAQELAILCD AEVAVIIFSN TGKLFEFSSA  60
GMMRTLSRYN KCLDSSEDAP EEGKAEIQKQ DCKELDNLKD EYAKLQKKQL RLLGKELTDL  120
SLKELQQLEQ QLNEGLLTVK ERKEQLLTEQ LEQSRIQVEE LRCLFPQTDS VVQSYLEYYP  180
VEKTKSLVNH GVTHSPDLVS NFAFENGDSD TTLQLGLPSD ACGKRKAPER EANSNDSGSQ  240
LGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.17e-63MIKC_MADS family protein