PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP007541.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 601aa MW: 65888.1 Da PI: 6.5939

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP007541.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48	2.3e-15	172	217	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ E+rRR+riN+++ L l+P++ K +Ka++L +A+eY+k+Lq PCP007541.1 172 HNMSEKRRRSRINEKMKALLNLIPNS-----NKTDKASMLDEAIEYLKQLQ 217 ***********************7.....5****************9 PP
2	HLH	35.8	1.4e-11	400	446	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h Er RR+++++ f+ L llP++ K +K++i+ + ++YIksL+ PCP007541.1 400 HTWTERERRKKMRNMFSSLHALLPHL----PAKADKSTIVDESIRYIKSLE 446 6668*******************6....39***************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MADLYGSAPD SEEISNIISE LLHGRGSSAS SAYSSMPFKP TYMHLLHSSV PLPLQAATPS 60 EVLIPEARHE DHRRFAQLVD RSGSDQRVVG GNSNSARMLE SSSGFHFSDS SGYFTAEVKE 120 GMESDGRRIS SENYLGDFSC DSEKGLEEAP DVQLNSAPPR SSSKRSRAAD VHNMSEKRRR 180 SRINEKMKAL LNLIPNSNKT DKASMLDEAI EYLKQLQLQM LTMRNGLSLH PMCIPGVMQP 240 MQLPHMGLSF EEGSNKFPKS SKGISPFYGS GENSMQSAFN LSAGYMISNP PMVIPSVANV 300 PTSEPIFGSE PSVQAHYRLF SVPSSSKELF SDGELQSKVD TIRTGKNSSS DVDLENVSSS 360 CPTPTNTVEK KEVVEIKESS DKAGGGPGGR AGGESDHGVH TWTERERRKK MRNMFSSLHA 420 LLPHLPAKAD KSTIVDESIR YIKSLELTLQ TTQTQRLDKF SALPASYRES TCDTREAFLA 480 DHFHQGPQTS INLALPAALS PPPASFQTWF SPNVVLNMSG NDAQISVCSP PKLGMLTTLF 540 YILEKHKLDV VSAHISSDRC RCMYLIHAHA GGACDNFPEV LSVEDTFKLA ASEMNLWLLS 600 R

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MADLYGSAPD SEEISNIISE LLHGRGSSAS SAYSSMPFKP TYMHLLHSSV PLPLQAATPS  60
EVLIPEARHE DHRRFAQLVD RSGSDQRVVG GNSNSARMLE SSSGFHFSDS SGYFTAEVKE  120
GMESDGRRIS SENYLGDFSC DSEKGLEEAP DVQLNSAPPR SSSKRSRAAD VHNMSEKRRR  180
SRINEKMKAL LNLIPNSNKT DKASMLDEAI EYLKQLQLQM LTMRNGLSLH PMCIPGVMQP  240
MQLPHMGLSF EEGSNKFPKS SKGISPFYGS GENSMQSAFN LSAGYMISNP PMVIPSVANV  300
PTSEPIFGSE PSVQAHYRLF SVPSSSKELF SDGELQSKVD TIRTGKNSSS DVDLENVSSS  360
CPTPTNTVEK KEVVEIKESS DKAGGGPGGR AGGESDHGVH TWTERERRKK MRNMFSSLHA  420
LLPHLPAKAD KSTIVDESIR YIKSLELTLQ TTQTQRLDKF SALPASYRES TCDTREAFLA  480
DHFHQGPQTS INLALPAALS PPPASFQTWF SPNVVLNMSG NDAQISVCSP PKLGMLTTLF  540
YILEKHKLDV VSAHISSDRC RCMYLIHAHA GGACDNFPEV LSVEDTFKLA ASEMNLWLLS  600
R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	5e-35	bHLH family protein