PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP007626.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18981.7 Da    PI: 9.8446
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP007626.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.6e-29959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krie+   rqvtfskRrng++KKA+ELSvLCdaeva+++fs +gklye+ss
  PCP007626.1  9 KRIEDAASRQVTFSKRRNGLMKKAFELSVLCDAEVALVVFSARGKLYEFSS 59
                 79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MVRGKTQMKR IEDAASRQVT FSKRRNGLMK KAFELSVLCD AEVALVVFSA RGKLYEFSSS  60
SINNTLDRYQ MRVKDAGHLT TKAFEEDMES QLLTEQIDKL KEEEKKLLQQ NTRLWEMCSM  120
QPLRASRTSK HGDDHGVFLP QTPNMDVETD LFIGPPKRRR SGQNP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.32e-41MIKC_MADS family protein