PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP007661.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 491aa MW: 54922.6 Da PI: 9.1823

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP007661.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.3	2e-14	87	131	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd ll ++v+++ +Wk+Ia+ ++ gRt+ qc rw k+l PCP007661.1 87 SWTAEEDNLLGELVTKFNRSSWKKIAAGLP-GRTDIQCLQRWKKVL 131 7***************99******.**********976 PP
2	Myb_DNA-binding	58.4	1.6e-18	137	183	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ +++ v+++G ++W+ Ia+ ++ gR +kqc++rw+++l PCP007661.1 137 KGAWTKEEDDCIIKQVEKHGAKRWSVIAKFLP-GRIGKQCRERWHNHL 183 79****************************.***********97 PP
3	Myb_DNA-binding	50.9	3.7e-16	189	231	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r++WT++E+++++ +++++G++ W+ Iar ++ gRt++ +k++w+ PCP007661.1 189 RDAWTKDEEQIIAYYHQLYGNK-WAEIARFLP-GRTDNAIKNFWN 231 789*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MLSAFPPNSC AAFPPTLTQT RKIDFFREIM TKINRKHPED AGIGSHEKMG FLFQALYEAE 60 YCSDSPFPKP SSIHWRTTGP TRRSAKSWTA EEDNLLGELV TKFNRSSWKK IAAGLPGRTD 120 IQCLQRWKKV LNPEVVKGAW TKEEDDCIIK QVEKHGAKRW SVIAKFLPGR IGKQCRERWH 180 NHLCPAINRD AWTKDEEQII AYYHQLYGNK WAEIARFLPG RTDNAIKNFW NCTLKRKFNS 240 YSPNGCEVDM QSDVLSGEAR TDRLEVEEDG QISDSLVSLN HLTETQISDN TCSTELTLGF 300 SYSHDICSEW KSVKVQKRRS TERRASSLVN PQIATPFAFM EASTCTKSNC IPPTRPPCYS 360 TPRSLAQNTS VSSGSPGSRL KNLALSFKNT PSIIRKKSSR RTDPNNFPDV NSSKACSTLS 420 STSDGGGTNS SDFANGKFGS FSFRHRPQNS AAVKSLGRRL EREFDAEKDS GSDQCGHALS 480 AYASPDVGFG A

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MLSAFPPNSC AAFPPTLTQT RKIDFFREIM TKINRKHPED AGIGSHEKMG FLFQALYEAE  60
YCSDSPFPKP SSIHWRTTGP TRRSAKSWTA EEDNLLGELV TKFNRSSWKK IAAGLPGRTD  120
IQCLQRWKKV LNPEVVKGAW TKEEDDCIIK QVEKHGAKRW SVIAKFLPGR IGKQCRERWH  180
NHLCPAINRD AWTKDEEQII AYYHQLYGNK WAEIARFLPG RTDNAIKNFW NCTLKRKFNS  240
YSPNGCEVDM QSDVLSGEAR TDRLEVEEDG QISDSLVSLN HLTETQISDN TCSTELTLGF  300
SYSHDICSEW KSVKVQKRRS TERRASSLVN PQIATPFAFM EASTCTKSNC IPPTRPPCYS  360
TPRSLAQNTS VSSGSPGSRL KNLALSFKNT PSIIRKKSSR RTDPNNFPDV NSSKACSTLS  420
STSDGGGTNS SDFANGKFGS FSFRHRPQNS AAVKSLGRRL EREFDAEKDS GSDQCGHALS  480
AYASPDVGFG A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	2e-74	MYB family protein