PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008333.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 478aa MW: 53088.5 Da PI: 7.1831

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008333.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.8	1e-40	186	262	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls++k+yhr+h++C hsk+p+v+v+g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+ PCP008333.1 186 CQVEGCNLDLSSVKDYHRKHRICANHSKSPKVVVDGVERRFCQQCSRFHGLSEFDENKRSCRRRLSDHNARRRKPQT 262 **************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MNSVLMMEWN EKPPSPWDLE NLFMYGAKVT ENPKKLQPAD WGIERERGLN SESLYSTGGD 60 GGSGVSGSDF GDGSSKCSKS ASVNSSVGES KKSNFNFESS EGFPKDFFDK KDSAEAEALG 120 SSPTHEVSAG SGEPLLSLKL GKRMYFEDVC AGNNHETSSL SVISTSIPTR TKRYKSPAQS 180 AFASHCQVEG CNLDLSSVKD YHRKHRICAN HSKSPKVVVD GVERRFCQQC SRFHGLSEFD 240 ENKRSCRRRL SDHNARRRKP QTEVARHPAR LSSSLFITDD RQQMSLAFDQ GPYVYTKHAS 300 NLTWDGSCNL KFAQTKDYFP NPAKAGGNAR QLNFANNETP GSITMLYQDS SRLSPSENTA 360 AEVLNQGAEE SMISFNLDAT RDIHRALSLL STSPWVSGES KPVPFDTNQS YHNNLPQQGM 420 HAMTQGVPVS SEYWQSQHPS LDTQAHVSHS HSNVSNHFQD LHQFKAPYEF GYHPNQFS

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MNSVLMMEWN EKPPSPWDLE NLFMYGAKVT ENPKKLQPAD WGIERERGLN SESLYSTGGD  60
GGSGVSGSDF GDGSSKCSKS ASVNSSVGES KKSNFNFESS EGFPKDFFDK KDSAEAEALG  120
SSPTHEVSAG SGEPLLSLKL GKRMYFEDVC AGNNHETSSL SVISTSIPTR TKRYKSPAQS  180
AFASHCQVEG CNLDLSSVKD YHRKHRICAN HSKSPKVVVD GVERRFCQQC SRFHGLSEFD  240
ENKRSCRRRL SDHNARRRKP QTEVARHPAR LSSSLFITDD RQQMSLAFDQ GPYVYTKHAS  300
NLTWDGSCNL KFAQTKDYFP NPAKAGGNAR QLNFANNETP GSITMLYQDS SRLSPSENTA  360
AEVLNQGAEE SMISFNLDAT RDIHRALSLL STSPWVSGES KPVPFDTNQS YHNNLPQQGM  420
HAMTQGVPVS SEYWQSQHPS LDTQAHVSHS HSNVSNHFQD LHQFKAPYEF GYHPNQFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	2e-78	SBP family protein