PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008349.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

TCP

Protein Properties

Length: 249aa MW: 26822.9 Da PI: 10.4358

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008349.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.4	2.6e-38	31	154	2	99
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg......... 88 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i ++tg+++ +as+ aess+s+++ +s + PCP008349.1 31 APKRSSTKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIQWLLQQAEPSIVAATGSGTMPASALaaAAESSVSEQG-NSVSsglmsfghl 127 789******************************************************************888844444444444.3333477777777 PP TCP 89 ................kaaksaakskk 99 +++ +++++++ PCP008349.1 128 grsnaatgiwpfvsgiRSSFDHNSGQQ 154 777777777666666544444434444 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MAENNKPPAQ IKDLQIMIAN KEKDESKKQL APKRSSTKDR HKKVDGRGRR IRMPALCAAR 60 VFQLTRELGH KSDGETIQWL LQQAEPSIVA ATGSGTMPAS ALAAAAESSV SEQGNSVSSG 120 LMSFGHLGRS NAATGIWPFV SGIRSSFDHN SGQQTLNFGG ENLNFMHKFG FQGFDAPSNL 180 GSMSFPTTLS GSNQQAPGLE LGLSQDGHIG LVNSQALSLT QFLQNKVQRP RGVGSFNQQQ 240 QQQQSNTNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	9e-65	TCP family protein