PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008600.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 678aa MW: 76809.8 Da PI: 6.5577

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008600.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.5	1.9e-11	198	241	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L PCP008600.1 198 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 241 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MELNEHGFLE ELLALRRDSS SSSTWETNIP TEMNELLSSS GSWGNFDYFD QQNPSSSFLP 60 ISSCTHDFSP SFEPNFNSSN FNSNTTVNQE VYYPLGFGIT DEALLSAHQQ VTDSSYNTLD 120 TPPFPVPEDN PWSMLEEEEL GFPGDEMHNL ETQAEAAGCK VEPTQSPDQV PAFNIGMCVE 180 RNTRANNKKL QGQPSKNLMA ERRRRKRLND RLSMLRSIVP KISKMDRTSI LGDTIDYMKE 240 LLERINNLQQ EIEADPDQLN VMSLFKDIKP NEMLVRNSPK FDVQRRNVDT KIDICCTGKP 300 GLLLSTVSTL EALGLQIQQC VISCFNEFAM QASCSEDFDQ RTIVTSEDIK QALYRNAGYG 360 GRCLMKGRTR AMGVKLDLEK AYDYLNWDYI RYVILKGMRW RVGNDEDQMH LFVKLNFDGS 420 VVGDKMAVRF VLRNHNGQII GGGALNLDGA TISEVEAMAL REGLFFAQRK GYTKIMVEGD 480 SELIIQSILD RDLRDCCYTC RHLGHVRNCN WKVPTRRDDA NRKDTYGTPL FAGYGTVAIN 540 FAKETSHSST DVADMARRYS RKVSLLDWGN MDHLDNLGTH HHNRTFTLTI SPKHGMTLFQ 600 KRKTREVSPT PSFEKCRKTL LGGKLSCSSI LCNRGSKKHG GHGRHDGRGN KKLLVEVADE 660 DIREVPISPY KEFKDVEL

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MELNEHGFLE ELLALRRDSS SSSTWETNIP TEMNELLSSS GSWGNFDYFD QQNPSSSFLP  60
ISSCTHDFSP SFEPNFNSSN FNSNTTVNQE VYYPLGFGIT DEALLSAHQQ VTDSSYNTLD  120
TPPFPVPEDN PWSMLEEEEL GFPGDEMHNL ETQAEAAGCK VEPTQSPDQV PAFNIGMCVE  180
RNTRANNKKL QGQPSKNLMA ERRRRKRLND RLSMLRSIVP KISKMDRTSI LGDTIDYMKE  240
LLERINNLQQ EIEADPDQLN VMSLFKDIKP NEMLVRNSPK FDVQRRNVDT KIDICCTGKP  300
GLLLSTVSTL EALGLQIQQC VISCFNEFAM QASCSEDFDQ RTIVTSEDIK QALYRNAGYG  360
GRCLMKGRTR AMGVKLDLEK AYDYLNWDYI RYVILKGMRW RVGNDEDQMH LFVKLNFDGS  420
VVGDKMAVRF VLRNHNGQII GGGALNLDGA TISEVEAMAL REGLFFAQRK GYTKIMVEGD  480
SELIIQSILD RDLRDCCYTC RHLGHVRNCN WKVPTRRDDA NRKDTYGTPL FAGYGTVAIN  540
FAKETSHSST DVADMARRYS RKVSLLDWGN MDHLDNLGTH HHNRTFTLTI SPKHGMTLFQ  600
KRKTREVSPT PSFEKCRKTL LGGKLSCSSI LCNRGSKKHG GHGRHDGRGN KKLLVEVADE  660
DIREVPISPY KEFKDVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	208	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-82	bHLH family protein