PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP008844.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 222aa MW: 25453.4 Da PI: 6.5923

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP008844.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.9	1.4e-12	84	109	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ PCP008844.1 84 YQPDICKDYKETGYCGYGDSCKFMHD 109 67789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
METETEFSRD ARAVRERVLK QAEEALKGKG KTTGNEKLYK GIHGYTDYKA GFRRELTVAS 60 EKAGGAHGPL RASAHIRTST RFDYQPDICK DYKETGYCGY GDSCKFMHDR GDYKSGWQME 120 KEWDEAEKAR KRKLAMGDDY VDESEEDDDD DDEDDGSLPF TCFICRQPFV DPVVTKCNHY 180 FCEHCALKHH SKNKKCFVCD KPTLGIFNTA HEIRKRMAAE GK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-126	C3H family protein