PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009342.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 451aa MW: 49822.4 Da PI: 6.695

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009342.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.2e-08	355	395	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P + K++ a+iL +A +Y+k L PCP009342.1 355 ARQRRERISERIRVLQRLVPGgN------KMDTASILDEAANYLKFL 395 69****************955......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MDGLDWDDWD DGSHITNTST LLWSNQVHDL EELLVSNSSS SAFIPIQGLP KVQTSHAIMN 60 SNTEKPSSIG CHQIAHQKNP CGLESVHVMS TLRADELCQA PLKVNMTYNL MSSLSTSTFM 120 AADHCGNLGK YVQPQANIQG LQDHHVKAKP VTIHSVDSLD CLLSATNSNT DTSVEDDDGI 180 SMLFSDCRRN LWNFGAGNNS AISSGESENN ETVVSQSSSD LYVQSQGKPN STKRSHDQSE 240 PKLHGANYSH FGLLQTDYSS TSEGGFRLIS DNPSKMKKPR SDNKRPSSSN ISFQQPTSSV 300 STSSIEEPDP EVIAQMKEMI YRAAAFRPVN LGLELVERPK RKNVKISSDP QTVAARQRRE 360 RISERIRVLQ RLVPGGNKMD TASILDEAAN YLKFLRSQVK ALENLGQKIE SMSNSNIPTT 420 SFAFSFYPSF PMQTHNHVPL QNPNHIHQPH G

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MDGLDWDDWD DGSHITNTST LLWSNQVHDL EELLVSNSSS SAFIPIQGLP KVQTSHAIMN  60
SNTEKPSSIG CHQIAHQKNP CGLESVHVMS TLRADELCQA PLKVNMTYNL MSSLSTSTFM  120
AADHCGNLGK YVQPQANIQG LQDHHVKAKP VTIHSVDSLD CLLSATNSNT DTSVEDDDGI  180
SMLFSDCRRN LWNFGAGNNS AISSGESENN ETVVSQSSSD LYVQSQGKPN STKRSHDQSE  240
PKLHGANYSH FGLLQTDYSS TSEGGFRLIS DNPSKMKKPR SDNKRPSSSN ISFQQPTSSV  300
STSSIEEPDP EVIAQMKEMI YRAAAFRPVN LGLELVERPK RKNVKISSDP QTVAARQRRE  360
RISERIRVLQ RLVPGGNKMD TASILDEAAN YLKFLRSQVK ALENLGQKIE SMSNSNIPTT  420
SFAFSFYPSF PMQTHNHVPL QNPNHIHQPH G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	356	361	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-85	bHLH family protein