PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP009394.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 227aa    MW: 24657.9 Da    PI: 8.0079
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP009394.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.33e-39181181100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC k+C++apyf aeq +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG++++i++lqqq+ +l+aela++
  PCP009394.1  18 PCGACKFLRRKCIKGCIFAPYFDAEQgTAHFAAVHKVFGASNASKLLLRIPPHKRLDAVVTLCYEALARVRDPVYGCASHIFTLQQQVVNLQAELAYI 115
                  7***********************9989********************************************************************99 PP

       DUF260  98 kee 100
                  +++
  PCP009394.1 116 QAR 118
                  875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MSGSSSNGNN DNGGGGGPCG ACKFLRRKCI KGCIFAPYFD AEQGTAHFAA VHKVFGASNA  60
SKLLLRIPPH KRLDAVVTLC YEALARVRDP VYGCASHIFT LQQQVVNLQA ELAYIQARLG  120
TLQRFPLPPQ PPQLEIPPPT RSLQYSSSNI NVTSSSSSDM VPTPNILTHC DPLQAPNTSS  180
EMSSLFNTED QELIDGENLQ ALAREFVCRY LPGVRLNKSS GSHHQNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.16e-61LBD family protein