PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP009715.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 229aa    MW: 24600.7 Da    PI: 7.3116
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP009715.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.15.8e-282105199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C ++p++      ++q++++ +++k++G++ +l+l++a ++  r+++++sl+yeA+ r+ +P yG+vg+++++ ++ +q++++
  PCP009715.1   2 SCNGCRVLRKGCSDECEIRPCIewiksSESQANATLFLAKFYGRAGLLNLINAGSPALRPAIFKSLLYEACGRIVNPTYGSVGLMWSGGWDQCQAAVD 99 
                  6*********************9999778899****************************************************************99 PP

       DUF260  94 lallke 99 
                  ++l ++
  PCP009715.1 100 AVLEGS 105
                  987665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MSCNGCRVLR KGCSDECEIR PCIEWIKSSE SQANATLFLA KFYGRAGLLN LINAGSPALR  60
PAIFKSLLYE ACGRIVNPTY GSVGLMWSGG WDQCQAAVDA VLEGSPIMGI DADVLKRNTN  120
PNLDPPHKSG DIRHVSRDTT SGNSSHNKAT TRNKLKRSVN RPKIQPDFAT GSNTKSLAQV  180
CNVPDPDDLY PIPQGNGSRG DQQAADDQDG EVGLELTLGL GLPPLTHLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.12e-70LBD family protein