PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009874.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 183aa MW: 20935 Da PI: 10.1509

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009874.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.4e-18	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++++G g+W++ ++ g+ R++k+c++rw +yl PCP009874.1 11 KGAWSKQEDQKLIDYIQKHGEGCWNSLPKAAGLSRCGKSCRLRWINYL 58 79********************************************97 PP
2	Myb_DNA-binding	48.1	2.7e-15	69	108	6	47
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ PCP009874.1 69 EDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTH 108 89*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence
MRKPCYEKIN KGAWSKQEDQ KLIDYIQKHG EGCWNSLPKA AGLSRCGKSC RLRWINYLRP 60 DLKRESIRED EEDLIIRLHA LLGNRWSLIA GRLPGRTDNE VKNYWNTHIR KKLLKMGRTL 120 DPKKPHHHND PHLRRGTTAS VPLLQPDTST PISFALPSDS MSTGAEIHSN KSGLPDLNLD 180 LSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	9e-65	MYB family protein