PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009910.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-X1

Protein Properties

Length: 1895aa MW: 208809 Da PI: 8.2151

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009910.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	19.2	2.6e-06	392	409	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C++ CH+GpC+ C PCP009910.1 392 CGNHSCSEVCHPGPCGDC 409 ****************99 PP
2	zf-NF-X1	16.5	1.8e-05	546	563	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C++lCH G CppC PCP009910.1 546 CGQHSCESLCHSGHCPPC 563 ****************** PP

Sequence ? help Back to Top
Protein Sequence Length: 1895 aa Download sequence
MSFHVQNERR DRSRFLAQPA TQPTQPARRE WVLRGTNPTT ATAAVNPPPV YPNPTGNVSQ 60 PNPRFNPNNL NGNLSQPNPR FNPNNLNGNA GLPNHSSVPS EIRPHRGGNN GVIKGHMGQS 120 ANHRRERGRS ENQEEKGLKD SNLPQLVQEI QDKLTKGTVE CMICYEMVRR SAPVWSCSSC 180 YSIFHLNCIK KWARAPTSID MSAEKNQGFN WRCPGCQSVQ LTSSKEIQYV CFCGKRTDPP 240 SDLYLTPHSC GEPCGKQLER EVPGKGVSKD DLCPHVCVLQ CHPGPCPPCK AFAPPRLCPC 300 GKKTITTRCS DRASVLTCGQ HCNKLLDCWR HRCERTCHVG PCDPCQVLVD ASCFCKKKVE 360 VVLCGDMTVK GEVKAEDGVF SCSSPCGKML SCGNHSCSEV CHPGPCGDCN LMPIKIKTCH 420 CGKTSLQEER RSCLDPIPTC SQLCSKSLPC EMHQCQEVCH TGDCPPCLVE VTQKCRCGST 480 SRSAECFKTT MENEKFTCDK PCGRKKNCGR HRCSERCCPL SNLNNALLGD WDPHFCSMSC 540 GKKLRCGQHS CESLCHSGHC PPCLDTIFTD LTCACGRTSI PPPLPCGTPP PSCQLPCSVP 600 QPCGHTSSHS CHFGDCPPCS VPVAKECIGG HVVLRNIPCG SRDIKCNKLC GKTRQCGMHA 660 CGRTCHPPPC DTSCLAEQGS KTSCGQICGA PRRDCRHTCT SLCHPYASCP DSRCDFPVTI 720 TCSCGRMTAS VPCDSGGSNA SFKADIVYEA SIVQRLPAPL QPIESTCKNI LLGQRKLMCD 780 DECAKRERKR VLADAFDITP PNLDALHFGE SSAVSELLSD LLRRDPKWVL SVEERCKYLV 840 LGKSRRATSG LKVHVFCPML KEKRDVVRMI AERWKLAVQA AGWEPKRFIV VHVTPKSKAP 900 ARILGVKGTI TVSAPQPPAY EHLVDMDPRL VVSFPDLPRD ADISALVLRF GGECEVVWLN 960 DKNALAVFND PARAATARRR LDNGALYHGA IAVHSNGSAS MAASGSNAWG GLGTSREGGA 1020 SAVLMGNPWK KTVTQESGWR EDSWGKEEWP GSSTDAPANV WNKKAPIAAS VNRWSVLDGD 1080 TALGSSASSP RVEESRKQSL GPLNSALDLK ASGSSSSSTL EGRPVGVIAE TPEVVDDWEK 1140 TSMEPQLTAP NQFKETWKHT LLLSFQSLGV IYGQMSTAPL YVFGTLTAGD IPSEDTVYEL 1200 FSFIFWTINF ISLLKYAFIV LTADDNGEGG TFALYSLLCR HAKVGLLPNE SSANDVMHYE 1260 TGSPFKIKAE SRARRAIEKL RCSHYLMLFL ALFGCCMTIC IGVLTPTLSV YSVSSGIQRS 1320 LSDISHRIST SEKRREAISR ALEKYVPVST ASAILVCLFT LQHYGTRKIG FIFAPIVVVW 1380 LFFIGGGGVY NIFHWNKEIL LATSPMYMYR FFRNIHIKSW RSLGSIALCV AGSEAMFTSL 1440 GHFRRKSIKM TFVCFIYPVL VLSYAGQAAY ISKNLDVKDF NHLSQSIPKQ MRHWFVAFSL 1500 LASVVGSQAT ITACFSIINQ CLALGCFPRV KVIHTSDKIH GQVYIPDINW LLMVLSLLIT 1560 IGFHDIIKIG SATGLAVSSG MLVTTCLMSL VIALYWEKSL FESVCCLIFF GSIEVMYVSA 1620 CMLNFHKGAW YFVVLLALSL TIMLSWHYGT KKKLEFDIQN KVSAEWLTGI SPGLGVTRVP 1680 GIGFIYSDIV TGIPAFFSHF ITNLPAFHQV LIFVSFKSLP MPYVPPSRRY LVGRVGPSNF 1740 KIYRCVVRYG YCDPIRDTDN FEEQIISSIG EFICMEENDF DSQNSSEGRM VVIGKPPADG 1800 TGSALIPLND TNSYEMDCVS MASNETRSPL ESLQLHSIFL MLLLLRLAWS VAYELYCQTP 1860 CGQGIEQRVV QRARGEKEED RIWDRRRYKK PVLLV

Sequence ? help Back to Top

Protein Sequence Length: 1895 aa Download sequence

MSFHVQNERR DRSRFLAQPA TQPTQPARRE WVLRGTNPTT ATAAVNPPPV YPNPTGNVSQ  60
PNPRFNPNNL NGNLSQPNPR FNPNNLNGNA GLPNHSSVPS EIRPHRGGNN GVIKGHMGQS  120
ANHRRERGRS ENQEEKGLKD SNLPQLVQEI QDKLTKGTVE CMICYEMVRR SAPVWSCSSC  180
YSIFHLNCIK KWARAPTSID MSAEKNQGFN WRCPGCQSVQ LTSSKEIQYV CFCGKRTDPP  240
SDLYLTPHSC GEPCGKQLER EVPGKGVSKD DLCPHVCVLQ CHPGPCPPCK AFAPPRLCPC  300
GKKTITTRCS DRASVLTCGQ HCNKLLDCWR HRCERTCHVG PCDPCQVLVD ASCFCKKKVE  360
VVLCGDMTVK GEVKAEDGVF SCSSPCGKML SCGNHSCSEV CHPGPCGDCN LMPIKIKTCH  420
CGKTSLQEER RSCLDPIPTC SQLCSKSLPC EMHQCQEVCH TGDCPPCLVE VTQKCRCGST  480
SRSAECFKTT MENEKFTCDK PCGRKKNCGR HRCSERCCPL SNLNNALLGD WDPHFCSMSC  540
GKKLRCGQHS CESLCHSGHC PPCLDTIFTD LTCACGRTSI PPPLPCGTPP PSCQLPCSVP  600
QPCGHTSSHS CHFGDCPPCS VPVAKECIGG HVVLRNIPCG SRDIKCNKLC GKTRQCGMHA  660
CGRTCHPPPC DTSCLAEQGS KTSCGQICGA PRRDCRHTCT SLCHPYASCP DSRCDFPVTI  720
TCSCGRMTAS VPCDSGGSNA SFKADIVYEA SIVQRLPAPL QPIESTCKNI LLGQRKLMCD  780
DECAKRERKR VLADAFDITP PNLDALHFGE SSAVSELLSD LLRRDPKWVL SVEERCKYLV  840
LGKSRRATSG LKVHVFCPML KEKRDVVRMI AERWKLAVQA AGWEPKRFIV VHVTPKSKAP  900
ARILGVKGTI TVSAPQPPAY EHLVDMDPRL VVSFPDLPRD ADISALVLRF GGECEVVWLN  960
DKNALAVFND PARAATARRR LDNGALYHGA IAVHSNGSAS MAASGSNAWG GLGTSREGGA  1020
SAVLMGNPWK KTVTQESGWR EDSWGKEEWP GSSTDAPANV WNKKAPIAAS VNRWSVLDGD  1080
TALGSSASSP RVEESRKQSL GPLNSALDLK ASGSSSSSTL EGRPVGVIAE TPEVVDDWEK  1140
TSMEPQLTAP NQFKETWKHT LLLSFQSLGV IYGQMSTAPL YVFGTLTAGD IPSEDTVYEL  1200
FSFIFWTINF ISLLKYAFIV LTADDNGEGG TFALYSLLCR HAKVGLLPNE SSANDVMHYE  1260
TGSPFKIKAE SRARRAIEKL RCSHYLMLFL ALFGCCMTIC IGVLTPTLSV YSVSSGIQRS  1320
LSDISHRIST SEKRREAISR ALEKYVPVST ASAILVCLFT LQHYGTRKIG FIFAPIVVVW  1380
LFFIGGGGVY NIFHWNKEIL LATSPMYMYR FFRNIHIKSW RSLGSIALCV AGSEAMFTSL  1440
GHFRRKSIKM TFVCFIYPVL VLSYAGQAAY ISKNLDVKDF NHLSQSIPKQ MRHWFVAFSL  1500
LASVVGSQAT ITACFSIINQ CLALGCFPRV KVIHTSDKIH GQVYIPDINW LLMVLSLLIT  1560
IGFHDIIKIG SATGLAVSSG MLVTTCLMSL VIALYWEKSL FESVCCLIFF GSIEVMYVSA  1620
CMLNFHKGAW YFVVLLALSL TIMLSWHYGT KKKLEFDIQN KVSAEWLTGI SPGLGVTRVP  1680
GIGFIYSDIV TGIPAFFSHF ITNLPAFHQV LIFVSFKSLP MPYVPPSRRY LVGRVGPSNF  1740
KIYRCVVRYG YCDPIRDTDN FEEQIISSIG EFICMEENDF DSQNSSEGRM VVIGKPPADG  1800
TGSALIPLND TNSYEMDCVS MASNETRSPL ESLQLHSIFL MLLLLRLAWS VAYELYCQTP  1860
CGQGIEQRVV QRARGEKEED RIWDRRRYKK PVLLV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1884	1891	DRRRYKKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein