PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP009964.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 606aa MW: 66986.4 Da PI: 6.3159

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP009964.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	5e-13	437	483	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq PCP009964.1 437 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 483 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MALGGGVWND EDKAMVAAVL GTRAVDYLIS SSVSSIENSC MGIGSDENLH NKLSDLVERP 60 SASNFSWNYA IFWQISRSKS GDWVLCWGDG SCREPKEDEE SETTRILGLR LEDGTQQRMR 120 KIVLQKLHNL FGSSDEYNGA LGLDRVTDME MFLLASMYFS FPRGEGGPGK CLASGKHVWL 180 LDLLKSGSEY CVRSFLAESA GIQTIVLVPT DVGVVELGSV RCIGERLELL QSIRSLFSTE 240 SSFLRAKPVA GVPVIGRRID ENVQLTNLSP VERGEVVPKI FGQDLNSGNS VRPRYREKLA 300 VRKLEERPCD VYSNRNRIAF SSPRNGNHGS SWANIHDVKQ GSPIEMYVSQ SPVNNLQELV 360 RDDFRHNHYH PQKQVPMQID FSGTTSRPSV VSRPIVVDSE NSDAEAPCKE DQPGTADERR 420 PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAIAYIN 480 ELQAKLKVME TERENLGGTS RDVSALGASS GIEIQNQAPD VDVQAVNDEV IVRVSCPLDS 540 HPASRVIEAF KEAQITVVES KLAAANDTVS HTFVVKSQGS EQLTKEKLLA AFSRESNSLQ 600 SLSSVG

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MALGGGVWND EDKAMVAAVL GTRAVDYLIS SSVSSIENSC MGIGSDENLH NKLSDLVERP  60
SASNFSWNYA IFWQISRSKS GDWVLCWGDG SCREPKEDEE SETTRILGLR LEDGTQQRMR  120
KIVLQKLHNL FGSSDEYNGA LGLDRVTDME MFLLASMYFS FPRGEGGPGK CLASGKHVWL  180
LDLLKSGSEY CVRSFLAESA GIQTIVLVPT DVGVVELGSV RCIGERLELL QSIRSLFSTE  240
SSFLRAKPVA GVPVIGRRID ENVQLTNLSP VERGEVVPKI FGQDLNSGNS VRPRYREKLA  300
VRKLEERPCD VYSNRNRIAF SSPRNGNHGS SWANIHDVKQ GSPIEMYVSQ SPVNNLQELV  360
RDDFRHNHYH PQKQVPMQID FSGTTSRPSV VSRPIVVDSE NSDAEAPCKE DQPGTADERR  420
PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAIAYIN  480
ELQAKLKVME TERENLGGTS RDVSALGASS GIEIQNQAPD VDVQAVNDEV IVRVSCPLDS  540
HPASRVIEAF KEAQITVVES KLAAANDTVS HTFVVKSQGS EQLTKEKLLA AFSRESNSLQ  600
SLSSVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	419	427	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	0.0	bHLH family protein