PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP010020.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 335aa    MW: 37601.2 Da    PI: 6.0767
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP010020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-161360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++ ++ +G g+W+++++  g+ R++k+c++rw +yl
      PCP010020.1 13 RGLWSPEEDEKLLNHINTFGHGSWSSVPKLAGLERCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding47.63.8e-1566109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++ E+  +vd+++ lG++ W+ Ia++++ gRt++++k++w++
      PCP010020.1  66 RGPFSEIEERTIVDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MGHHCCSKQK IKRGLWSPEE DEKLLNHINT FGHGSWSSVP KLAGLERCGK SCRLRWINYL  60
RPDLKRGPFS EIEERTIVDV HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGF  120
DPNTHNLLPS SKANPSNINN NNNIHACNIF SPSSFFSVNS SHVSADTSID ILEAPYLTLP  180
STSSPRTNHV DISLHERSTI STCEFLNPNM VWSTTLVQDQ INPIVLTEFM GINNVPTIST  240
SHSYPISELE NIVNESFQPI TKSTNPKDML LQSQQEEACE VVENENPSVL NGAQANIDAS  300
FGSSNFDLDF MESTELPCGM YNYQPSPMDQ LTWNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-81MYB family protein