PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP010587.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 213aa    MW: 22973.1 Da    PI: 5.5967
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP010587.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601376.6e-43461451100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+++
  PCP010587.1  46 PCAACKILRRRCADKCVLAPYFPPSEPAKFTIAHRVFGASNIIKLLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVNELQAQLAKAQ 143
                  7**********************************************************************************************999 PP

       DUF260  99 ee 100
                  +e
  PCP010587.1 144 AE 145
                  76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MECSTETMNT NYTTTSSTMS QSPPSSSPSS PPTLTPTPSP TVVVSPCAAC KILRRRCADK  60
CVLAPYFPPS EPAKFTIAHR VFGASNIIKL LQELPESQRA DAVSSMVYEA SARIRDPVYG  120
CAGAICHLQK QVNELQAQLA KAQAEVVNMQ CQQANLVALI CMEMSQPNSE QGSPPQSLDH  180
NFVTTIPHGG NQTNLGFLDD STTLGSLWDP LWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.14e-68LBD family protein