PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP010797.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 355aa MW: 40296.9 Da PI: 6.6111

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP010797.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.4e-17	14	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g + R++k+c++rw +yl PCP010797.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGhgLQRCGKSCRLRWINYL 63 788*********************************************97 PP
2	Myb_DNA-binding	53	7.8e-17	69	113	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l++ ++ G++ W+ Ia++++ gRt++++k++w+++ PCP010797.1 69 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 113 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGHGLQR CGKSCRLRWI 60 NYLRPDIRRG RFTPEEEKLI ISLHGVVGNR WAHIASHLPG RTDNEIKNYW NSWIKKKIRK 120 PSTPSSATTI SPPPSVDHHQ HIIPQLGNYN NQLDFAHQDL STTIKPQAQE TLFSSTCPMF 180 MFDTSTTANI EAAPDSYNAR GEIFQDMIVT TGLNSSEPWN LNQHQVQAFP PPVTMSFNTT 240 SSSTNNITMN TNYLPPLIEN MDNMVPNVDH HHHHHHHQSC NNIDEEGNHD QIALECLMQR 300 QELNEWVVSQ QQCSSFLFWD SVVDDQATVL AGQDHGIAHP TSSNAVQLSS FPPSL

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGHGLQR CGKSCRLRWI  60
NYLRPDIRRG RFTPEEEKLI ISLHGVVGNR WAHIASHLPG RTDNEIKNYW NSWIKKKIRK  120
PSTPSSATTI SPPPSVDHHQ HIIPQLGNYN NQLDFAHQDL STTIKPQAQE TLFSSTCPMF  180
MFDTSTTANI EAAPDSYNAR GEIFQDMIVT TGLNSSEPWN LNQHQVQAFP PPVTMSFNTT  240
SSSTNNITMN TNYLPPLIEN MDNMVPNVDH HHHHHHHQSC NNIDEEGNHD QIALECLMQR  300
QELNEWVVSQ QQCSSFLFWD SVVDDQATVL AGQDHGIAHP TSSNAVQLSS FPPSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	2e-93	MYB family protein