PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP010851.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Whirly
Protein Properties Length: 251aa    MW: 27327.5 Da    PI: 10.4148
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP010851.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly207.31.8e-64742092137
       Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePl 99 
                  ++k+kaal++ +v+ptf++l+sg+l+++r+G+++l++++a++erkydWek+q falsatev+ l++l++++sce+fhdp++k+sn+G+vrk+l+++P+
  PCP010851.1  74 IFKGKAALSLTPVLPTFTKLESGSLVVDRRGSVMLKFTPAIGERKYDWEKRQMFALSATEVGALISLGPNDSCELFHDPSMKSSNAGQVRKSLSIKPH 171
                  9************************************************************************************************* PP

       Whirly 100 pdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                  +dGsG+fv+l+v n+l+k+ esfsvPv+ aefav++++
  PCP010851.1 172 ADGSGYFVSLTVVNNLLKTRESFSVPVTTAEFAVMKTA 209
                  ************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MSSGIPHLSL SRATKMLKVL RVLSSSTAKF RSHICTRDAL SMYAFTHITR FSTATQKFSV  60
KGPSSHQVYA SFDIFKGKAA LSLTPVLPTF TKLESGSLVV DRRGSVMLKF TPAIGERKYD  120
WEKRQMFALS ATEVGALISL GPNDSCELFH DPSMKSSNAG QVRKSLSIKP HADGSGYFVS  180
LTVVNNLLKT RESFSVPVTT AEFAVMKTAC SFALPHIMGW DRLTNKMPAG GGGGGGQESK  240
AVPQLLEEWD R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-89Whirly family protein