PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP010918.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 234aa    MW: 26433.8 Da    PI: 9.8797
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP010918.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.61e-203078149
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 kr+e+k +r+vtfskR+ gi+ KA ELSvL++ae a i++ss+gk++ +
  PCP010918.1 30 KRVEDKNKRHVTFSKRKRGIFNKAAELSVLTGAETAAIVVSSNGKVFCF 78
                 799******************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MAKGPNNKIT DKDIANGKKE REGPRRVEIK RVEDKNKRHV TFSKRKRGIF NKAAELSVLT  60
GAETAAIVVS SNGKVFCFGS PSPDAVIDRY LGENTSLLPA GQPDNHLQNN NIHHSSSKKQ  120
IEDYVEASRR LKEAKVLKGG KNSNNNGGEG RERGCSYGWW ERQIGMMSSL EELKEYRDAL  180
YKLKHNVEVR TNRMIREASP SNHFSLLLFM DDIWSSPEFS QGQGCMAPEF NFFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-19M-type_MADS family protein