PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP011280.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 163aa    MW: 18254.9 Da    PI: 8.2021
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP011280.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS170.21.6e-522163214374
         GRAS 214 ldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhet 311
                  +desvs++++rde+L+ vk+l P+vv++veqe+++n+++F++r+ e++ yy al++s+ea++pre+ er+kvE++ l+r++vn vaceg++r+er+e 
  PCP011280.1   2 PDESVSMDNPRDELLRRVKGLAPRVVTLVEQELNTNTAPFMARVNECCAYYGALLESIEATVPRENPERVKVEEA-LSRKVVNSVACEGRDRVERCEV 98 
                  799************************************************************************.********************** PP

         GRAS 312 lekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++kWr+r+++aGF+  p++ +++++ k  l   +  +  ++v+ee+g +++gW +r+L+++SaWr
  PCP011280.1  99 FGKWRARMGMAGFELRPMGPNMTESLKNRLGSGNrvNSAFTVKEENGGVCFGWISRTLTVASAWR 163
                  ***************************999877765566*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MPDESVSMDN PRDELLRRVK GLAPRVVTLV EQELNTNTAP FMARVNECCA YYGALLESIE  60
ATVPRENPER VKVEEALSRK VVNSVACEGR DRVERCEVFG KWRARMGMAG FELRPMGPNM  120
TESLKNRLGS GNRVNSAFTV KEENGGVCFG WISRTLTVAS AWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.14e-80GRAS family protein