PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011369.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 340aa MW: 38152.7 Da PI: 7.9323

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011369.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.8	8.7e-09	86	110	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +f G C+ G++C++aHg PCP011369.1 86 YKTRLCVNFKS-GMCRNGENCNYAHG 110 9******99.***********8 PP
2	zf-CCCH	28.4	2.8e-09	148	170	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yGdrC+F H PCP011369.1 148 MKLCKKFYNGEECPYGDRCNFLH 170 689****66********** PP
3	zf-CCCH	38.4	2e-12	229	254	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ + tG C++ ++C+FaHg PCP011369.1 229 WKTKLCNKWETTGKCPFSEKCHFAHG 254 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MNFSDHSQFR PPQTPYNGGG SDVVNCWPPA FSMNNDDQHS QVEQQPFKRA RNSEERQSNP 60 MPYPPMNYTV QQPSAPVNKG ASNIFYKTRL CVNFKSGMCR NGENCNYAHG IEDIRHPPPN 120 WQELVSIRDE DRPLSGNWDD DQKIIHRMKL CKKFYNGEEC PYGDRCNFLH EDPSKFRDDS 180 GRFRENTAIS IGTTGAPVAH GSGSNPPEEN RLVNAGMDAS RGNVKPVYWK TKLCNKWETT 240 GKCPFSEKCH FAHGLTELQA PGGRTVEAEF LNTPPLPIPQ VVAAVNSSAT AIAALPALNN 300 DGGQRKKGML KWKGSKKINR IYADWLDDVP LVHQHNLVES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	6e-81	C3H family protein