PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP011508.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 1010aa    MW: 111921 Da    PI: 7.149
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP011508.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.2e-12323379155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  PCP011508.1 323 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 379
                  78*******************87776664446655.77******************98 PP
2AP238.33.2e-12682738155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  PCP011508.1 682 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 738
                  78*******************87776664446655.77******************98 PP
3AP245.22.3e-14783832355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PCP011508.1 783 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 832
                  9***************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1010 aa     Download sequence    
MKSMGNDGNN SNSNNNWLDF SLSPNMKMES PSSSSSVAAA SFFHSPPHFS YGVYYGVEGG  60
GGGEGEDNGP VLYSPLSMMP LKSDGSLCIM EALNRSQHHP HAAMVTTTSP TPKLEDFFGG  120
AAMGTHHYES ANDKEAMALS LDSMFYPQNP HPTTHHHVPS NHQNLLSHNL QHEQHTQQHH  180
QQHYSSYYSG LRTHEMFLED GHKQTHVSAD NYDLHPARMG LDLSIAEMKS WVSRNNVMEQ  240
NNMAAGCMGD NGGMPYGDLQ CLSLSMSPGS QSSCVTGSQQ ISPTVTADCV TMVVDTKKRG  300
PIKVDQKQIV HRKSLDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QSRKGRQGGY  360
DMEEKAARAY DLAALKYWGP STHINFPIES SSSSVAAAAS FFHSPPHFNY GIYYGLEGGG  420
GGGRGEDNSP VLYSPLSMMP LKSDGSLCIM EAFNGSQHHL QAAMVTTTSP TPKLEDFFGG  480
ATMGTHQYES SDREAMALSL DSMFYLQNPH PTTQHHVPSN HQNLMSHSLQ QHQQQTQQHQ  540
QQYSSSYYSG LRTHATILEE GHKQTHVSAD YYNMHPARIG IDQSIAEMKS WVSRNNAMDQ  600
NNMAAGCMGE NGGLSYGDLQ CLSLSMSPGS QSSCVTSSQQ ISPTVTTDCV TLVDTKKRGL  660
EKVDQKQIVH RKSLDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ SRKGRQGGYD  720
MEEKAARAYD LAALKYWGPS THINFPLEDY KKELEDMKNM TRQEYVAHLR RKSSGFSRGA  780
SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD  840
ITRYDVDQIM SSNTLLASEL AKRNKEVVLV NEGTNQNNVT QIGNGEAVVS RKNISEGEDW  900
KMALYQSSQQ LDQKQPSTET RNVTQAEAED YGKMGAAHFS NASSLVTSLG SSREGSPDKS  960
SQPSFFGMPP SASKFFTSSS DAVSSWIPTV QSRPGLTNPH MPIFANWTDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-125AP2 family protein