PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011581.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CO-like

Protein Properties

Length: 398aa MW: 44349.4 Da PI: 6.1896

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011581.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.7	7.2e-06	18	59	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r+C+++ + fC+ ++ +lC C ++H H++ PCP011581.1 18 RVCDTCRAAACTVFCRADSAYLCSGCDATIHAAncvasrHER 59 79****99*******************65677777765 PP
2	zf-B_box	29.8	1.3e-09	60	105	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ ++ lC C +H+ H++vp+ PCP011581.1 60 VWVCEACERAPAAFLCKADSASLCTACDADIHSAnplarrHQRVPI 105 689***************************668999999997 PP
3	CCT	69.7	7.3e-24	329	372	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ PCP011581.1 329 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 372 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MLKDDQSNGT AANHNWARVC DTCRAAACTV FCRADSAYLC SGCDATIHAA NCVASRHERV 60 WVCEACERAP AAFLCKADSA SLCTACDADI HSANPLARRH QRVPILPISG CPYGPQAIEQ 120 GRMKLVRSAT AEMEDGFVSQ EGDETIDEED EDEAASWLLL NPVKNNNNNN NTTTTTTKNN 180 GLFFGVEVDE YLDLVEYNSC ADQNNQFTDH HQQEQQQEQR YGVPHKNYGG DSVVPVHQYG 240 EVGKAHQMQQ LQKQSFHQLG LEYESSKAAY SYNGSLSHSV SVSSMDVGVV PNSTMIDISI 300 SHPRTPKGTI DLFSGSSIQM PTQLSPMDRE ARVLRYREKK KTRKFEKTIR YASRKAYAET 360 RPRIKGRFAK RTEMEVEVDQ MFSTTLMAEN GYGIVPSF

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MLKDDQSNGT AANHNWARVC DTCRAAACTV FCRADSAYLC SGCDATIHAA NCVASRHERV  60
WVCEACERAP AAFLCKADSA SLCTACDADI HSANPLARRH QRVPILPISG CPYGPQAIEQ  120
GRMKLVRSAT AEMEDGFVSQ EGDETIDEED EDEAASWLLL NPVKNNNNNN NTTTTTTKNN  180
GLFFGVEVDE YLDLVEYNSC ADQNNQFTDH HQQEQQQEQR YGVPHKNYGG DSVVPVHQYG  240
EVGKAHQMQQ LQKQSFHQLG LEYESSKAAY SYNGSLSHSV SVSSMDVGVV PNSTMIDISI  300
SHPRTPKGTI DLFSGSSIQM PTQLSPMDRE ARVLRYREKK KTRKFEKTIR YASRKAYAET  360
RPRIKGRFAK RTEMEVEVDQ MFSTTLMAEN GYGIVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-109	CO-like family protein