PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011726.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 186aa MW: 21044 Da PI: 10.215

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011726.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.1e-18	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++++G g+W++ ++ g++R++k+c++rw +yl PCP011726.1 13 KGAWSKQEDQKLIDYIQKHGEGRWNSLPKAAGLRRCGKSCRLRWINYL 60 79********************************************97 PP
2	Myb_DNA-binding	48.4	2.1e-15	67	110	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ PCP011726.1 67 GSIGEDEEDLIIRLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 66679**************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MRKPGCDKIE TNKGAWSKQE DQKLIDYIQK HGEGRWNSLP KAAGLRRCGK SCRLRWINYL 60 RPDLKRGSIG EDEEDLIIRL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRKKLLKMGS 120 TLDPKKPHDH HDPHLRRGTT ASVPVLQPDA RKPILFASSS SDSMSTGAEI HSNESGLPDL 180 NLDLSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	3e-65	MYB family protein