PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP011749.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 237aa    MW: 26756.7 Da    PI: 8.6923
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP011749.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94e-171055148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
      PCP011749.1 10 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 55
                     7999******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MNYLRPDIKR GNITPDEDDL IIRLHSLLGN RWSLIAGRLP GRTDNEIKNY WNTHLSKRLR  60
NEGTDPNTHK KLSEPIAKEN KRRKNQRSKN NNNKKEMVMT KDKNKKTAQH VEPQKPKVHL  120
PKPTRFTSLL SLPRNDSFTS STTVTTGSSS QDLNRGGGRG GGGGGFGVNT WCNNGLVFCV  180
GDEDQDHDPI NSSADGGDDH TLENLYEEYL QALLKTDHHH DHQNQLELES FAESLLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156165GGGRGGGGGG
2157166GGGRGGGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-36MYB family protein