PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011784.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 429aa MW: 47951.5 Da PI: 6.8897

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011784.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.6e-08	365	410	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P +k + ae+L +A +I++Lq PCP011784.1 365 SIAERMRRTRISERMKKLQELFPDM----DKQTNTAEMLDLAAGFIRDLQ 410 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MSSLLYKYNP NFKASEGELR KNHAAEFMDS DIFHHQHPQQ QQSSGLTRYQ SAPSSFLMEQ 60 MDNNGGGTED LRYLQPSSPE VETVLPRFIS SCNEPDQRDN GVQQHQFEIQ ERPVNVKGEA 120 GDSVSEHING YSNSTHMMYQ APRRQQAHGL ESSSFAAVNS TEMENSMMQS KIGVGNRSNL 180 VRQGSSPAGF FPDLTVDDGF NMMKDSAGYR SGNGTNGEAS PSTSRFGTQL SFSSRPSSYS 240 GRMPRIAENE NGNLGEGSQS QPDHSLGNAN GSNSPYQSSF ANDSWDDSSF NDLKIARDND 300 GNKFSTSTAF ESQNNDFGHR NHGLTQHLRF SKHFEMPAME KYLQFEDSTP CKSRAKRGFA 360 THPRSIAERM RRTRISERMK KLQELFPDMD KQTNTAEMLD LAAGFIRDLQ KQVKTLKDSK 420 AKCSCSSKQ

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MSSLLYKYNP NFKASEGELR KNHAAEFMDS DIFHHQHPQQ QQSSGLTRYQ SAPSSFLMEQ  60
MDNNGGGTED LRYLQPSSPE VETVLPRFIS SCNEPDQRDN GVQQHQFEIQ ERPVNVKGEA  120
GDSVSEHING YSNSTHMMYQ APRRQQAHGL ESSSFAAVNS TEMENSMMQS KIGVGNRSNL  180
VRQGSSPAGF FPDLTVDDGF NMMKDSAGYR SGNGTNGEAS PSTSRFGTQL SFSSRPSSYS  240
GRMPRIAENE NGNLGEGSQS QPDHSLGNAN GSNSPYQSSF ANDSWDDSSF NDLKIARDND  300
GNKFSTSTAF ESQNNDFGHR NHGLTQHLRF SKHFEMPAME KYLQFEDSTP CKSRAKRGFA  360
THPRSIAERM RRTRISERMK KLQELFPDMD KQTNTAEMLD LAAGFIRDLQ KQVKTLKDSK  420
AKCSCSSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-49	bHLH family protein