PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011792.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 404aa MW: 45748.6 Da PI: 6.4425

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011792.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.1e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ PCP011792.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99**6666.***********5 PP
2	zf-CCCH	22.4	2.1e-07	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C +G+rC++ H+ PCP011792.1 34 ICTFYQK-GACAFGSRCRYEHV 54 7****.*********997 PP
3	zf-CCCH	20.4	9.1e-07	142	165	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+ fa+ G C++G++C+ +Hg PCP011792.1 142 DRAICS-FAAAGNCPRGEKCPHIHG 165 588999.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MSKRVLCKFF AHGACLKGEH CEFSHDWKAS PNNICTFYQK GACAFGSRCR YEHVKASQAQ 60 SSGSSSSTNS QPSLAIDSAS LALPVRTLAS RFSLAPLSLS ELSASSSPFL PPSKPDWNGS 120 LEDDYDNDES NVGETRSTRP EDRAICSFAA AGNCPRGEKC PHIHGDLCPS CGKHCLHPYR 180 PLERGEHMKT CEDKQKQLEA LKRSQEIECS VCLERVLSKP TVAERKFGIL SECDHPFCIS 240 CIRNWRSSSP TSGMDVNSAL RACPICRKLS YFVIPSVIWY NSKEEKQEIV ESYKARLRSI 300 DCKHFDFGNG NCPFGTSCFY KHTVNPGSYV WKFHRPPPRR PPPRRYDIAP MDVIFHMFEH 360 LEELDDYMFE DLENEDLNPW EREILMQMGL DTSDSSEDEI DLWP

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MSKRVLCKFF AHGACLKGEH CEFSHDWKAS PNNICTFYQK GACAFGSRCR YEHVKASQAQ  60
SSGSSSSTNS QPSLAIDSAS LALPVRTLAS RFSLAPLSLS ELSASSSPFL PPSKPDWNGS  120
LEDDYDNDES NVGETRSTRP EDRAICSFAA AGNCPRGEKC PHIHGDLCPS CGKHCLHPYR  180
PLERGEHMKT CEDKQKQLEA LKRSQEIECS VCLERVLSKP TVAERKFGIL SECDHPFCIS  240
CIRNWRSSSP TSGMDVNSAL RACPICRKLS YFVIPSVIWY NSKEEKQEIV ESYKARLRSI  300
DCKHFDFGNG NCPFGTSCFY KHTVNPGSYV WKFHRPPPRR PPPRRYDIAP MDVIFHMFEH  360
LEELDDYMFE DLENEDLNPW EREILMQMGL DTSDSSEDEI DLWP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-135	C3H family protein