PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP011929.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 523aa MW: 57123.7 Da PI: 7.7164

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP011929.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.7	2.8e-42	159	234	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls++k+yh+rhkvCevhsk+++v+++g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q PCP011929.1 159 CQVYGCNKDLSSCKDYHKRHKVCEVHSKTAKVIINGIEQRFCQQCSRFHLLGEFDDGKRSCRKRLAGHNERRRKPQ 234 **************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MESWSCISEG KGFVVSDETI SHTDSLSRSR NGLMGWELKI PCTFMESQGF GELGNLGLPE 60 MVGKHLQNDS IRDVVSTSIS TPNLFSGEAE SSSRISSSIV DSSSRDSSLI DLKLGRLADH 120 KGVHSSKLSK GTPMLSSSES STPTKRMRVS GVYSQPAYCQ VYGCNKDLSS CKDYHKRHKV 180 CEVHSKTAKV IINGIEQRFC QQCSRFHLLG EFDDGKRSCR KRLAGHNERR RKPQIGSHSG 240 RAERFPESFD GGRFEGNMVT TASFICQEIL PSGNLNPEKY GTSDWCRRLK VEGGTHYRPF 300 LGMPVANGHL HSKPVLPSYD IGKQYPPFHE NRTNPQNASI FGQNGSQYPQ DARGLSSGSH 360 SIFHETALGS QNLNVFDTAS AVQGLLGISD SGCALSLLSS QPQNSSSYLS GIPIARPLVI 420 PASHNFPSSG INSGAGNHLS PIPLSNGCDD TDDFGISDGI FQGSGFVNTK DRLPSQDGAT 480 INLLQLSSHL QRVEDQRQSM LVKQENDAFC FTENHLKSDL QIR

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MESWSCISEG KGFVVSDETI SHTDSLSRSR NGLMGWELKI PCTFMESQGF GELGNLGLPE  60
MVGKHLQNDS IRDVVSTSIS TPNLFSGEAE SSSRISSSIV DSSSRDSSLI DLKLGRLADH  120
KGVHSSKLSK GTPMLSSSES STPTKRMRVS GVYSQPAYCQ VYGCNKDLSS CKDYHKRHKV  180
CEVHSKTAKV IINGIEQRFC QQCSRFHLLG EFDDGKRSCR KRLAGHNERR RKPQIGSHSG  240
RAERFPESFD GGRFEGNMVT TASFICQEIL PSGNLNPEKY GTSDWCRRLK VEGGTHYRPF  300
LGMPVANGHL HSKPVLPSYD IGKQYPPFHE NRTNPQNASI FGQNGSQYPQ DARGLSSGSH  360
SIFHETALGS QNLNVFDTAS AVQGLLGISD SGCALSLLSS QPQNSSSYLS GIPIARPLVI  420
PASHNFPSSG INSGAGNHLS PIPLSNGCDD TDDFGISDGI FQGSGFVNTK DRLPSQDGAT  480
INLLQLSSHL QRVEDQRQSM LVKQENDAFC FTENHLKSDL QIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	5e-46	SBP family protein