PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP011955.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 240aa    MW: 27000.7 Da    PI: 6.5142
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP011955.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.92e-211562249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 +i n+   qvtfskRrng++KKA+EL++LC+ae+a+++fs+  k++ +
  PCP011955.1 15 KITNEASLQVTFSKRRNGLFKKASELCTLCGAEIALMVFSPGKKVFSF 62
                 58899999*********************************9999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MARTSRGRQR VPMTKITNEA SLQVTFSKRR NGLFKKASEL CTLCGAEIAL MVFSPGKKVF  60
SFGHPCFETL IDRFEGRLSL AQLTMGHDMQ QMLEAYRNVS LNVLSQDLTK VMVLVDNEKK  120
LGVNISQTMK ESMSENWWER PLEEIETDRL EFLRTYMEEL GCKVNETRGK MLLPQVFETA  180
NDNNNFFVGS SCSNTADGPY DHMMQTHANQ PSSSTGGGLN ENTSTWPFSA WNPSLGGGFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-49M-type_MADS family protein