PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012124.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

ERF

Protein Properties

Length: 484aa MW: 52154.3 Da PI: 7.6363

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012124.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.7	5.1e-16	224	259	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cgt + Tp++Rrgpdg++tLCnaCGl+++ k+ PCP012124.1 224 CRHCGTNEkcTPMMRRGPDGPRTLCNACGLMWANKH 259 ********************************9987 PP
2	AP2	60.5	3.8e-19	388	437	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++ G+r+++ +g+W+AeIrdp + kr +lg+f+taeeAa+a+++a + l+g PCP012124.1 388 RFVGIRRRP-WGKWAAEIRDP-----NlgKRLWLGTFDTAEEAAAAYDRASLMLRG 437 789****.******9.....556*******************999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MDNISGGDAP MHMSDEVHLQ YMQEHEHHQG LHQMSNGNGV ADDHDDGSGA DTGGAELSEV 60 NVQSEPVNLS DTRSGMVDHS SNNGDQLTLS FQGQVFVFDS VSPEKVQAVL LLLGGHEVPP 120 GMPAVPVTTQ HDNRALTSIP QRLSVPQRLA SLIRFREKRK ERNFDKKIRY TVRKEVALRM 180 QRKKGQFTSS KPNSDDSASA ITSWGSNENL DQDGNGSIPQ EAVCRHCGTN EKCTPMMRRG 240 PDGPRTLCNA CGLMWANKHQ IPNSIPPPSN SMSTVQINRS AANSDVRFSK QTTALAKLVI 300 RETPNPPRNP RIQPKLVRII HADADATDSS SDDNEDSVVP TVKRRVREIN LEVSLPSSAS 360 SSPPCSGRPK LSKRAKLQPK SGPDGGKRFV GIRRRPWGKW AAEIRDPNLG KRLWLGTFDT 420 AEEAAAAYDR ASLMLRGPRA VTNFPGAGET VVADEVVAAA EVGHGEGGGG VAAVGGGEGA 480 ADCL

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MDNISGGDAP MHMSDEVHLQ YMQEHEHHQG LHQMSNGNGV ADDHDDGSGA DTGGAELSEV  60
NVQSEPVNLS DTRSGMVDHS SNNGDQLTLS FQGQVFVFDS VSPEKVQAVL LLLGGHEVPP  120
GMPAVPVTTQ HDNRALTSIP QRLSVPQRLA SLIRFREKRK ERNFDKKIRY TVRKEVALRM  180
QRKKGQFTSS KPNSDDSASA ITSWGSNENL DQDGNGSIPQ EAVCRHCGTN EKCTPMMRRG  240
PDGPRTLCNA CGLMWANKHQ IPNSIPPPSN SMSTVQINRS AANSDVRFSK QTTALAKLVI  300
RETPNPPRNP RIQPKLVRII HADADATDSS SDDNEDSVVP TVKRRVREIN LEVSLPSSAS  360
SSPPCSGRPK LSKRAKLQPK SGPDGGKRFV GIRRRPWGKW AAEIRDPNLG KRLWLGTFDT  420
AEEAAAAYDR ASLMLRGPRA VTNFPGAGET VVADEVVAAA EVGHGEGGGG VAAVGGGEGA  480
ADCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	1e-103	GATA family protein