PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012204.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 246aa MW: 28071.9 Da PI: 8.1108

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012204.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.5	1.3e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s PCP012204.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	93.5	3.6e-31	80	174	6	100
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++ +++ es+++e+ kLk + e+Lqr+qR+llGedL++L+ keL+qLe+qLe slk++Rs+K++ ll+q+++lq+ke+ l e+n++L++kl+e PCP012204.1 80 QVNIPAKELESSYREYMKLKGRCESLQRTQRNLLGEDLGPLNTKELEQLERQLEASLKQVRSTKTQDLLDQLSDLQNKEQLLIEANRDLTMKLDE 174 455678899***********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFSN RGKLYEFCSS 60 PSILKTLDRY QKCSYGAVDQ VNIPAKELES SYREYMKLKG RCESLQRTQR NLLGEDLGPL 120 NTKELEQLER QLEASLKQVR STKTQDLLDQ LSDLQNKEQL LIEANRDLTM KLDEIGSRNQ 180 LRQSWEGGDQ GMAYGTQHHH AQSQGFFQPL DCNPTLQIGY PAEGSEQMGA TTHAQQVNCF 240 IPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	1e-115	MIKC_MADS family protein