PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012209.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 720aa MW: 78761.5 Da PI: 10.4334

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012209.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.4	9.2e-10	29	82	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 +W t+E++ll++avk++G ++W+t+a +++ + t+ +ck ++++++ PCP012209.1 29 SSWGTWEELLLACAVKRYGVHDWDTVALELQaktslppLLTTASNCKVKYLDLR 82 57*****************************99999998889999999998775 PP

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence
MKGGAATGGS PSFNNNITTT SDQTTTSTSS WGTWEELLLA CAVKRYGVHD WDTVALELQA 60 KTSLPPLLTT ASNCKVKYLD LRRRFRSRHQ NDDVPPDADD NHHDPDNNNT NNIPWLDDLR 120 KLRVAQLRQE LHRYDVSIVS LQLKVKRLEE EREESFKDDD PKPDLEDQQQ QDSNRHRSEN 180 DKTVQGEPDG SKPDHENQSV NGSNSTCSKN LDHDNKSGPE DRALSEPGLL PAGSAEPSKR 240 TGSGQSDSDS DKGSSETVAK NRKEPGRQGK GGGDSADKMR ESSEAQSSVS LTKKWNGKRR 300 RIMEVPEKQQ QHNNGDVSLV KSQPLVEVLQ LICAQEYGSL FERRLPAQES DKYKSIVQQH 360 VDLETIQTKL RKDAYSSCSL SFYRDLLLLF NNAVVFFPKS SLESRTAHQL RRLVLNEMKK 420 KNLITRPNHD PSSEPSDSVV PAPATSQQPK RPEQLERSDS LLAKQKSAAP IIVCRKRSSI 480 SSKPSAAASS FGQTLKGDEK KKAAAFDLKP SINATKASSD DHAAAEKHGS SVVVKSAAAA 540 KAKDNPVITG TRSSRRTSMS TAHHENNNGS ASKKKQSASP ASLKAETPKP DKKGKTEAAG 600 SDKKRSAAAD FLKRIKRNSP ADTLKSGGTG TGTSSRSGGE QKRRGSGGKV DKVKERVLRQ 660 SGDKKKQAKE ESSSPSKRSV GRPPKKAAAE AAIVAASPKR PRESGGQQEA SKRPKKRSRR

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence

MKGGAATGGS PSFNNNITTT SDQTTTSTSS WGTWEELLLA CAVKRYGVHD WDTVALELQA  60
KTSLPPLLTT ASNCKVKYLD LRRRFRSRHQ NDDVPPDADD NHHDPDNNNT NNIPWLDDLR  120
KLRVAQLRQE LHRYDVSIVS LQLKVKRLEE EREESFKDDD PKPDLEDQQQ QDSNRHRSEN  180
DKTVQGEPDG SKPDHENQSV NGSNSTCSKN LDHDNKSGPE DRALSEPGLL PAGSAEPSKR  240
TGSGQSDSDS DKGSSETVAK NRKEPGRQGK GGGDSADKMR ESSEAQSSVS LTKKWNGKRR  300
RIMEVPEKQQ QHNNGDVSLV KSQPLVEVLQ LICAQEYGSL FERRLPAQES DKYKSIVQQH  360
VDLETIQTKL RKDAYSSCSL SFYRDLLLLF NNAVVFFPKS SLESRTAHQL RRLVLNEMKK  420
KNLITRPNHD PSSEPSDSVV PAPATSQQPK RPEQLERSDS LLAKQKSAAP IIVCRKRSSI  480
SSKPSAAASS FGQTLKGDEK KKAAAFDLKP SINATKASSD DHAAAEKHGS SVVVKSAAAA  540
KAKDNPVITG TRSSRRTSMS TAHHENNNGS ASKKKQSASP ASLKAETPKP DKKGKTEAAG  600
SDKKRSAAAD FLKRIKRNSP ADTLKSGGTG TGTSSRSGGE QKRRGSGGKV DKVKERVLRQ  660
SGDKKKQAKE ESSSPSKRSV GRPPKKAAAE AAIVAASPKR PRESGGQQEA SKRPKKRSRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	298	302	KRRRI
2	712	720	KRPKKRSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	6e-75	MYB_related family protein