PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP012230.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 359aa    MW: 40720.1 Da    PI: 7.0171
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP012230.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-0690113226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  k  lC f+ + G+C  G +CkF+H+
  PCP012230.1  90 KSILCEFYKA-GQCAKGFKCKFSHD 113
                  6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQS LKQSVEPKAD PSKTAVKKKK  60
EEEKAKDKEL NELFKVAISQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DNEETMEGWD QETLEKVVES KKNEYKQNKP TDIVCKYFLE AVEKKQYGWF  180
WVCPNGGKNC HYRHALPPGY VLKSQMKALL EEESEKIPIE EEIENQRAKL TTSTPMTPEL  240
FMQWRKKKIA ERDAGLAVQM AERAKNDRMS GRELFLSDSS LFVDDAEAHG NYQREQEPAV  300
SEKKVIESSN GHGPSNPATA GGDAEVTNFN DDDELDIDEL NELEASLAKV TIQEPGARA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-163C3H family protein