PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012295.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 1812aa MW: 197265 Da PI: 6.9575

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012295.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.9	1e-14	846	892	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ E+rRR+riN+++ L+ l+P++ K +Ka++L +++eY+k+Lq PCP012295.1 846 VHNMSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEVIEYLKQLQ 892 6***********************7.....5****************9 PP
2	HLH	38	2.9e-12	1083	1129	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h Er RR++++s f++L llP++ K +K++i+ +A++YIksL+ PCP012295.1 1083 HTWTERGRRKKMRSMFSNLHALLPQL----PAKADKSTIVDEAIRYIKSLE 1129 6668*******************6....39***************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1812 aa Download sequence
MQGQRGTIGS LPEMLDFDHG SASNDAALDQ QICWNSTRNP AERIPDYVQS PGDMNVVNSM 60 GQERQHLSRW CLGEPSSSNS QSEVSRDERK PELGWSSSVD PCVEAASRLE ERRYEPTNNL 120 SLGNNVNTIF TQSSSSDAIP QNLNLNAAFA GHGGDNSQVM ECPNTFKYNV SENEQIRPPS 180 GSNPFMLPSG TAGFLMGEND GRSGSSLEGR RVSCKRKAME GNIGQSSLSG SCSYFQHTDS 240 GGRTSVPAHY NAGGSLSIST PSEQGNSRLG VVGRALASDS LPDSNAGRSS EGTHRNFRVR 300 INPSNQQNSI PSNRFPSGRA ARHSSISSSH HSPSLLPVDH NMDLRPAPAL DNTSSQNPPV 360 VIHVPALPQN VQSLRWSGGS SSRTGSLSNS LVFGDRDAPQ PPPLEEGSSR SMARHILDHP 420 VFVPATELRN SARHPAGASN RNLPGGNASI PGNVASASRT GTSSGVNPAA APTWVPPHNS 480 HPQFPRRLSE YVRRSLFSAS GSEPGSHGTN YLPMRSGPAS SPEVGSSSGT GNQGHHQSHP 540 RSASWMERHG DGGLGLPYSL RTLAAAGGEG SSRLVSEICN VLGLMRRGEN LRFEDVMILD 600 QSVLFGVADI HDRHRDMRLD VDNMSYEELL ALEERIGNVN TGLSEETISK RLKHKKYVAV 660 GSPADTEPCC VCQVFFAIPW CCSIGLFKAP DSEEISNILS QLIHGHGSSA SSCMPFKPTY 720 MHSSVPPPIQ AATPSEVLIP EARHEDHRRF AQLVNQSGTD QRVARGNSNS AGVLDSSTAF 780 DFYDSGGYFT KEVKEGMESD GRRISSENDL GGYSCDSEKD LEEAADGQLN SAPPRSSSKR 840 SRAAEVHNMS EKRRRSRINE KMKALQNLIP NSNKTDKASM LDEVIEYLKQ LQLQVQMLTM 900 RNGLSLHPMC LPGVMQPMQL PHIFEEGSNK FPKSGKGISP FYGTHENSVL SAFNLSAGCM 960 ISNPPMVLPS VANVATSEAT FGFEPSIQAH YRPFSVPSSS KHSTYFAYTL YQSIVKLSCQ 1020 KTCGGGGGGS GSGELLKLEK VSSSCPTPTN TMEQKEVMIK ESNGKVGGRD RDGGGDESDH 1080 GVHTWTERGR RKKMRSMFSN LHALLPQLPA KADKSTIVDE AIRYIKSLEH TLQTTQTQGL 1140 DKFSALTVSN TELTCDTREA FLADHFHQGP PTSNNLALPA SLFPPPASFQ TWFSPNFVMN 1200 MSGNDAQISV CSPPKPGLLT TMFYILEKHK LDVVSAHVSS DRCHCMYMIH AHAGGACDNF 1260 PEALSVEYIF KLAAGGGVEL ESTMSGYSFL NDQLSKRTSI FGLHLWVVLG ICVGAAIVLV 1320 LFLISLWFTS RRNSASSKAK TFTHNSSTIP NVSKEIQEIR IDHARNHPSQ PDPKPTNHQS 1380 HPDPVADSDS SGARPQPLLL QQDDHHESPA GSAGRQRIHI EIGKDHRILY PEKGGGGGGS 1440 SHGSGEVRSG DQGMIAAPEV SHLGWGHWYT LRELEDSTNG FADENVIGEG GYGIVYRGVL 1500 EDNTIVAVKN LLNNKGQAEK EFKVEVEAIG RVRHKNLVRL LGYCAEGAHR MLVYEYVDNG 1560 NLEQWLHGDV GPTSPLVWES RMNIILGTAK GLTYLHEGLE PKVVHRDIKS SNILLDKQWN 1620 SKVSDFGLAK LLGSERSYVT TRVMGTFGYV APEYASTGML NERSDVYSFG ILIMEIISGR 1680 NPVDYSRAPG EVNLVEWLKA MVTNRNAEGV LDPRLPEKPS SRALKRALLV ALRCVDPNAQ 1740 KRPKMGHVVH MLEADEFPFR DESRAGREHG RSPRDAGRMD KRVIESGDSS GYESSAQTNM 1800 SLWRKQEVEE EH

Sequence ? help Back to Top

Protein Sequence Length: 1812 aa Download sequence

MQGQRGTIGS LPEMLDFDHG SASNDAALDQ QICWNSTRNP AERIPDYVQS PGDMNVVNSM  60
GQERQHLSRW CLGEPSSSNS QSEVSRDERK PELGWSSSVD PCVEAASRLE ERRYEPTNNL  120
SLGNNVNTIF TQSSSSDAIP QNLNLNAAFA GHGGDNSQVM ECPNTFKYNV SENEQIRPPS  180
GSNPFMLPSG TAGFLMGEND GRSGSSLEGR RVSCKRKAME GNIGQSSLSG SCSYFQHTDS  240
GGRTSVPAHY NAGGSLSIST PSEQGNSRLG VVGRALASDS LPDSNAGRSS EGTHRNFRVR  300
INPSNQQNSI PSNRFPSGRA ARHSSISSSH HSPSLLPVDH NMDLRPAPAL DNTSSQNPPV  360
VIHVPALPQN VQSLRWSGGS SSRTGSLSNS LVFGDRDAPQ PPPLEEGSSR SMARHILDHP  420
VFVPATELRN SARHPAGASN RNLPGGNASI PGNVASASRT GTSSGVNPAA APTWVPPHNS  480
HPQFPRRLSE YVRRSLFSAS GSEPGSHGTN YLPMRSGPAS SPEVGSSSGT GNQGHHQSHP  540
RSASWMERHG DGGLGLPYSL RTLAAAGGEG SSRLVSEICN VLGLMRRGEN LRFEDVMILD  600
QSVLFGVADI HDRHRDMRLD VDNMSYEELL ALEERIGNVN TGLSEETISK RLKHKKYVAV  660
GSPADTEPCC VCQVFFAIPW CCSIGLFKAP DSEEISNILS QLIHGHGSSA SSCMPFKPTY  720
MHSSVPPPIQ AATPSEVLIP EARHEDHRRF AQLVNQSGTD QRVARGNSNS AGVLDSSTAF  780
DFYDSGGYFT KEVKEGMESD GRRISSENDL GGYSCDSEKD LEEAADGQLN SAPPRSSSKR  840
SRAAEVHNMS EKRRRSRINE KMKALQNLIP NSNKTDKASM LDEVIEYLKQ LQLQVQMLTM  900
RNGLSLHPMC LPGVMQPMQL PHIFEEGSNK FPKSGKGISP FYGTHENSVL SAFNLSAGCM  960
ISNPPMVLPS VANVATSEAT FGFEPSIQAH YRPFSVPSSS KHSTYFAYTL YQSIVKLSCQ  1020
KTCGGGGGGS GSGELLKLEK VSSSCPTPTN TMEQKEVMIK ESNGKVGGRD RDGGGDESDH  1080
GVHTWTERGR RKKMRSMFSN LHALLPQLPA KADKSTIVDE AIRYIKSLEH TLQTTQTQGL  1140
DKFSALTVSN TELTCDTREA FLADHFHQGP PTSNNLALPA SLFPPPASFQ TWFSPNFVMN  1200
MSGNDAQISV CSPPKPGLLT TMFYILEKHK LDVVSAHVSS DRCHCMYMIH AHAGGACDNF  1260
PEALSVEYIF KLAAGGGVEL ESTMSGYSFL NDQLSKRTSI FGLHLWVVLG ICVGAAIVLV  1320
LFLISLWFTS RRNSASSKAK TFTHNSSTIP NVSKEIQEIR IDHARNHPSQ PDPKPTNHQS  1380
HPDPVADSDS SGARPQPLLL QQDDHHESPA GSAGRQRIHI EIGKDHRILY PEKGGGGGGS  1440
SHGSGEVRSG DQGMIAAPEV SHLGWGHWYT LRELEDSTNG FADENVIGEG GYGIVYRGVL  1500
EDNTIVAVKN LLNNKGQAEK EFKVEVEAIG RVRHKNLVRL LGYCAEGAHR MLVYEYVDNG  1560
NLEQWLHGDV GPTSPLVWES RMNIILGTAK GLTYLHEGLE PKVVHRDIKS SNILLDKQWN  1620
SKVSDFGLAK LLGSERSYVT TRVMGTFGYV APEYASTGML NERSDVYSFG ILIMEIISGR  1680
NPVDYSRAPG EVNLVEWLKA MVTNRNAEGV LDPRLPEKPS SRALKRALLV ALRCVDPNAQ  1740
KRPKMGHVVH MLEADEFPFR DESRAGREHG RSPRDAGRMD KRVIESGDSS GYESSAQTNM  1800
SLWRKQEVEE EH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1067	1075	GGRDRDGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	2e-40	bHLH family protein