PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012439.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 1180aa MW: 135111 Da PI: 6.6156

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012439.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	68.1	2.5e-21	353	436	43	127
NAM 43 ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + +d+ +k++++ewyf+ + k+++ + ++rat++g+Wk tg kev +++++++g k++L+fy+gr ++++ t Wvmhe+ PCP012439.1 353 DGHDMS-LIKSDDEEWYFYNRPIYKKNSRNDTERATSEGFWKITGPVKEVRARDNKTIGKKRILTFYRGRGRNAQITPWVMHEFY 436 555664.5788999*********************************************************************96 PP
2	NAM	27.8	7e-09	507	542	90	125
NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmhe 125 +e+++++++++g k+tL+fy+ +pk++kt+Wvmhe PCP012439.1 507 EEMIRRSKAVIGKKRTLTFYRRCEPKPKKTNWVMHE 542 4555568999*************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1180 aa Download sequence
MGTQQIVYWI MDTENFETLQ GLGAGSNAAN INRRESESLS RSYSGSCISL PSIAEPKPET 60 LAEPCLVSCT TFNILAPIYK RLDQQNQSLR ESDYRAFWVA RNQRILDWLL CKSSAIICLQ 120 EFWVGNEEFV NMYLDWLGDA GYTTFKLART NNRGDGLLTA VRRDCFSVRN YRELHFNDFG 180 DRVAQLLHVQ LAAPFSQNQR GNVQQEMLIV NTHLLFPHDS SLSIVRLHQV YKILQFVESY 240 QNEKKLNPMP IVLCGDWNGS KQGHVYKFLR SQGFESTYDT AHQYTDADAH KWVSHRNHRG 300 NICGVDFIWL RNPNKSRKPL KTSWCEAVFG ILRRQLQKAS MAENDAFAFL KGDGHDMSLI 360 KSDDEEWYFY NRPIYKKNSR NDTERATSEG FWKITGPVKE VRARDNKTIG KKRILTFYRG 420 RGRNAQITPW VMHEFYIPQI SPNANQRDFV LCHVKKKSRK NTDVATCDEA NERDENSDGE 480 FTNTLIVDPY QDSSEEMTHT NILNATEEMI RRSKAVIGKK RTLTFYRRCE PKPKKTNWVM 540 HENETPHDMC QELCAQSQKD MDSLRLHVAQ ESPTYVISKN NVSTSHDDEQ FRNTVSSSEN 600 QATNKRILEN LLTLNGLLHI LFSFYICNVN CYMLSMLHPT KEKRYPKGYT AAIRLRQGYL 660 DDWNGSKRGH VYKFLRSQGF ESTYDTAHQY TDADAHKWVS HRNHRGNICG VDFIWLCNPN 720 KSRKPLKASW CEAVFGILRR QLQKASMAEN DAFAFLKGDS HGDFITSSAF CEALQQKDFV 780 ICRMKKKSDE EDTSICEVEL GSCSVSNVED HAAAVVTPGS QDNSSSTLLS SGYIELEDVL 840 QANGTNDDCN VIQSPFGDNN CSYTNKNDIS TCDEGEPHSF TVSDFENETP HDMSQELCAQ 900 SQKDMDSLWL HVAQESPTYV ISKNNVSTSN DDEKFRNTVS NSENQATNKR ISEVCSPPEE 960 DLEIFFYPPQ LEDYTFDWNG SKRGHVFKFL RSQGFESTYD TAHQYTDADA HKWVSHRNHR 1020 GNICGVDFIW LCNPIKSRKP LKTSWCEAVF GILRLRKAWM AENDALAFLK GDGHGDFITS 1080 SAICEALQQV NLIGHPRGLG FQETRDLWIQ ADADANGVLD YKEFKNRILG STASEDKESL 1140 NGSREESKRG MQDALGFNVK NAVLYPREAE KGIWPEDYTL

Sequence ? help Back to Top

Protein Sequence Length: 1180 aa Download sequence

MGTQQIVYWI MDTENFETLQ GLGAGSNAAN INRRESESLS RSYSGSCISL PSIAEPKPET  60
LAEPCLVSCT TFNILAPIYK RLDQQNQSLR ESDYRAFWVA RNQRILDWLL CKSSAIICLQ  120
EFWVGNEEFV NMYLDWLGDA GYTTFKLART NNRGDGLLTA VRRDCFSVRN YRELHFNDFG  180
DRVAQLLHVQ LAAPFSQNQR GNVQQEMLIV NTHLLFPHDS SLSIVRLHQV YKILQFVESY  240
QNEKKLNPMP IVLCGDWNGS KQGHVYKFLR SQGFESTYDT AHQYTDADAH KWVSHRNHRG  300
NICGVDFIWL RNPNKSRKPL KTSWCEAVFG ILRRQLQKAS MAENDAFAFL KGDGHDMSLI  360
KSDDEEWYFY NRPIYKKNSR NDTERATSEG FWKITGPVKE VRARDNKTIG KKRILTFYRG  420
RGRNAQITPW VMHEFYIPQI SPNANQRDFV LCHVKKKSRK NTDVATCDEA NERDENSDGE  480
FTNTLIVDPY QDSSEEMTHT NILNATEEMI RRSKAVIGKK RTLTFYRRCE PKPKKTNWVM  540
HENETPHDMC QELCAQSQKD MDSLRLHVAQ ESPTYVISKN NVSTSHDDEQ FRNTVSSSEN  600
QATNKRILEN LLTLNGLLHI LFSFYICNVN CYMLSMLHPT KEKRYPKGYT AAIRLRQGYL  660
DDWNGSKRGH VYKFLRSQGF ESTYDTAHQY TDADAHKWVS HRNHRGNICG VDFIWLCNPN  720
KSRKPLKASW CEAVFGILRR QLQKASMAEN DAFAFLKGDS HGDFITSSAF CEALQQKDFV  780
ICRMKKKSDE EDTSICEVEL GSCSVSNVED HAAAVVTPGS QDNSSSTLLS SGYIELEDVL  840
QANGTNDDCN VIQSPFGDNN CSYTNKNDIS TCDEGEPHSF TVSDFENETP HDMSQELCAQ  900
SQKDMDSLWL HVAQESPTYV ISKNNVSTSN DDEKFRNTVS NSENQATNKR ISEVCSPPEE  960
DLEIFFYPPQ LEDYTFDWNG SKRGHVFKFL RSQGFESTYD TAHQYTDADA HKWVSHRNHR  1020
GNICGVDFIW LCNPIKSRKP LKTSWCEAVF GILRLRKAWM AENDALAFLK GDGHGDFITS  1080
SAICEALQQV NLIGHPRGLG FQETRDLWIQ ADADANGVLD YKEFKNRILG STASEDKESL  1140
NGSREESKRG MQDALGFNVK NAVLYPREAE KGIWPEDYTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01550.1	4e-16	NAC family protein