PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012458.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 714aa MW: 79493.8 Da PI: 7.3536

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012458.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.6e-09	610	655	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + e+Er RR+++N++ Lr ++P+ + K++Ka+ L A+ YI +Lq PCP012458.1 610 NVEAERHRRKKLNQRCYPLRAVVPNiS------KMDKASLLGDAITYITDLQ 655 5689*******************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence
MENLPPLHDE NNLILADPTL ILNTTTLNTT TLTDPTMNPL PVLSSSDMPP ESSDFKCDTC 60 VFAKSHRVSY PLNSNKSVTP FGLVHLDVWG PSPITTSSGR MYTTMDVTFS ESEMYYSSAF 120 SNPPLQGVTL HDEQVWTMAA SIDLPLPLLA EPAVATLPSQ PTEAISLPTK PAAGMAVLSL 180 PMAPVLPLAN VPNYQLPFRH NRGKPPNEYS PETTKDSKYP IANYVSSHKL SEPGKALGVT 240 LHDEQVWTMA ASTDLPLPLL AEPAVATLPS QPTEAISLRT KPAAGMAVLS LPMALVLPFA 300 DVPNYQLPFR HNRGKPPNQY SPETTKDFKY PIANYVSSHK LSEPGKALVQ QISNDSTPSS 360 LKEALSDDRW TKAMEEEMDA LQKNQTWDLV PLPRGKKRVG CRWVYAIKYK ADGSIERYKT 420 RLVAKGYTLT YGVDYTDTFT PVSKINTVRV LLSLAANLDW PLQQFDVKNA FLHGNLKEEV 480 YMDIPPGYAS VSQLGMVWGN LVTWRSKKQK VVALSSAEAE YRDTEVADQI QSLESFELQS 540 VGTSNGCRRE DSEGKLFPQI NQIMVNGFNV QTRVSSSELL KDESSTQIDE RKPRKRGRKP 600 ANGREEPLNN VEAERHRRKK LNQRCYPLRA VVPNISKMDK ASLLGDAITY ITDLQMKIRV 660 MKTEKQMVNN KGKQLPVPEI DFQERLEDAV VRMNCPLDSH PVSEVFRTLG NIKL

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence

MENLPPLHDE NNLILADPTL ILNTTTLNTT TLTDPTMNPL PVLSSSDMPP ESSDFKCDTC  60
VFAKSHRVSY PLNSNKSVTP FGLVHLDVWG PSPITTSSGR MYTTMDVTFS ESEMYYSSAF  120
SNPPLQGVTL HDEQVWTMAA SIDLPLPLLA EPAVATLPSQ PTEAISLPTK PAAGMAVLSL  180
PMAPVLPLAN VPNYQLPFRH NRGKPPNEYS PETTKDSKYP IANYVSSHKL SEPGKALGVT  240
LHDEQVWTMA ASTDLPLPLL AEPAVATLPS QPTEAISLRT KPAAGMAVLS LPMALVLPFA  300
DVPNYQLPFR HNRGKPPNQY SPETTKDFKY PIANYVSSHK LSEPGKALVQ QISNDSTPSS  360
LKEALSDDRW TKAMEEEMDA LQKNQTWDLV PLPRGKKRVG CRWVYAIKYK ADGSIERYKT  420
RLVAKGYTLT YGVDYTDTFT PVSKINTVRV LLSLAANLDW PLQQFDVKNA FLHGNLKEEV  480
YMDIPPGYAS VSQLGMVWGN LVTWRSKKQK VVALSSAEAE YRDTEVADQI QSLESFELQS  540
VGTSNGCRRE DSEGKLFPQI NQIMVNGFNV QTRVSSSELL KDESSTQIDE RKPRKRGRKP  600
ANGREEPLNN VEAERHRRKK LNQRCYPLRA VVPNISKMDK ASLLGDAITY ITDLQMKIRV  660
MKTEKQMVNN KGKQLPVPEI DFQERLEDAV VRMNCPLDSH PVSEVFRTLG NIKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	591	599	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	4e-54	bHLH family protein