PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP012608.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 354aa MW: 39994.4 Da PI: 8.7508

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP012608.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.7	2.5e-12	47	103	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g PCP012608.1 47 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 103 57*****************99998898888888******************98 PP
2	AP2	51.3	3e-16	146	197	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g PCP012608.1 146 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 197 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MAKLSHQNQK PNANNNNNAT AANNTAITKV KRTRRSVPRD SPPQRSSIYR GVTRHRWTGR 60 YEAHLWDKNC WNESQNKKGR QGAYDDEEAA AHAYDLAALK YWGQDTILNF PLSTYPKELK 120 EMEAQSREEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT 180 QEEAATAYDM AAIEYRGLNA VTNFDLSRYI KWLKPNGPNN DDNTGRPNPI AIEAKLPNVT 240 RSPNDQGRGL GFFQNLAYSP GEIMTIAQPR PTTATSALGL LLQSSKFKEM MEMTTATDSM 300 PSQPELGTSQ CTFPDDIQTY FDCQESSSYA DGDDVIFSEL NSFMPPMFQC DFTT

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MAKLSHQNQK PNANNNNNAT AANNTAITKV KRTRRSVPRD SPPQRSSIYR GVTRHRWTGR  60
YEAHLWDKNC WNESQNKKGR QGAYDDEEAA AHAYDLAALK YWGQDTILNF PLSTYPKELK  120
EMEAQSREEY IGSLRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT  180
QEEAATAYDM AAIEYRGLNA VTNFDLSRYI KWLKPNGPNN DDNTGRPNPI AIEAKLPNVT  240
RSPNDQGRGL GFFQNLAYSP GEIMTIAQPR PTTATSALGL LLQSSKFKEM MEMTTATDSM  300
PSQPELGTSQ CTFPDDIQTY FDCQESSSYA DGDDVIFSEL NSFMPPMFQC DFTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-102	AP2 family protein