PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP012804.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family ARR-B
Protein Properties Length: 244aa    MW: 27192.9 Da    PI: 6.4042
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP012804.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like79.93e-25181230151
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                  kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQ
  PCP012804.1 181 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQ 230
                  79*******************.***************************** PP
2Myb_DNA-binding35.52.4e-11183230145
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwq 45 
                      r  W+ e++ ++v av+qlG +   +k+I   m+ +++t++++ s++q
      PCP012804.1 183 RVVWSVELHRKFVAAVNQLGIDkaVPKKILDLMNvEKLTRENVASHLQ 230
                      678********************************99**********9 PP
3Response_reg63.41.1e-2131057109
                   SHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS CS
  Response_reg   7 eplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKp 101
                   ++++ ++   +++ +g+  v++++++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +g+ +++ + +  Ga d+l Kp
   PCP012804.1   3 SQFNEKIGVFIVSFDGF-AVTTTSQAITALKLLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGDHKLVMKGITHGACDYLLKP 97 
                   55666666666777899.9**************888888*******************87754.558****************************** PP

                   --HHHHHH CS
  Response_reg 102 fdpeelvk 109
                   + +e+l +
   PCP012804.1  98 VRIEQLKN 105
                   *****987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MDSQFNEKIG VFIVSFDGFA VTTTSQAITA LKLLRENKNK FDLVISDVHM PDMDGFKLLE  60
LVGLEMDLPV IMLSVNGDHK LVMKGITHGA CDYLLKPVRI EQLKNIWQHV VRRKKVDSKD  120
QNSGNQDKSA GCGEGGVGSV GTGNSDQNAK LNKKRKDQND GEDEDHDEDE YENDDPSTQK  180
KPRVVWSVEL HRKFVAAVNQ LGIDKAVPKK ILDLMNVEKL TRENVASHLQ ALPEKNQLCG  240
KPTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.17e-83ARR-B family protein